ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 125 9e-26
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 125 9e-26
3dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 9e-26
4dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 9e-26
5dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 9e-26
6dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB ... 125 9e-26
7ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predic... 121 1e-24
8gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence 113 3e-22
9gb|AY104362.1| Zea mays PCO060159 mRNA sequence 54 3e-04
10ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.0
11ref|XM_482858.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
12ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA 40 4.1
13ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.1
14ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.1
15gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 4.1
16ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosi... 40 4.1
17gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, com... 40 4.1
18gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, co... 40 4.1
19emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter ... 40 4.1
20gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se... 40 4.1
21emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 4.1
22emb|Y00864.1|MMCKIT Mouse c-kit mRNA 40 4.1
23gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance... 40 4.1
24gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region ... 40 4.1
25gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 4.1
26emb|AL732370.10| Mouse DNA sequence from clone RP23-413I21 on ch... 40 4.1
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
28dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.1
29dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
30emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 4.1
31dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
32gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.1
33gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.1
34dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 4.1 
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                         
Query: 164   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
             |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                                                         
Query: 224   atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
             ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863

                                        
Query: 284   tcgccgtccaggaagttgcggccctcc 310
             || || |||||||| |||||| |||||
Sbjct: 77862 tcaccatccaggaaattgcgggcctcc 77836
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                            
Query: 164      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
                |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                                                            
Query: 224      atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
                ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206

                                           
Query: 284      tcgccgtccaggaagttgcggccctcc 310
                || || |||||||| |||||| |||||
Sbjct: 29299205 tcaccatccaggaaattgcgggcctcc 29299179
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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                       
Query: 164 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 224 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                      
Query: 284 tcgccgtccaggaagttgcggccctcc 310
           || || |||||||| |||||| |||||
Sbjct: 614 tcaccatccaggaaattgcgggcctcc 588
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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 164  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 224  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                       
Query: 284  tcgccgtccaggaagttgcggccctcc 310
            || || |||||||| |||||| |||||
Sbjct: 3271 tcaccatccaggaaattgcgggcctcc 3245
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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                       
Query: 164 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 224 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                      
Query: 284 tcgccgtccaggaagttgcggccctcc 310
           || || |||||||| |||||| |||||
Sbjct: 614 tcaccatccaggaaattgcgggcctcc 588
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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  125 bits (63), Expect = 9e-26
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 164  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 223
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 224  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 283
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                       
Query: 284  tcgccgtccaggaagttgcggccctcc 310
            || || |||||||| |||||| |||||
Sbjct: 3271 tcaccatccaggaaattgcgggcctcc 3245
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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score =  121 bits (61), Expect = 1e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                        
Query: 166  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 225
            |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                                                        
Query: 226  cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 285
              |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||||
Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154

                                     
Query: 286  gccgtccaggaagttgcggccctcc 310
             || |||||||| |||||| |||||
Sbjct: 3153 accatccaggaaattgcgggcctcc 3129
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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score =  113 bits (57), Expect = 3e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 235
           ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                                                                       
Query: 236 acctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 295
           |||||||||||||||  || | | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365

                
Query: 296 aagtt 300
           |||||
Sbjct: 366 aagtt 370
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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 108/135 (80%)
 Strand = Plus / Minus

                                                                       
Query: 166 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 225
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                                                       
Query: 226 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 285
            ||||||| |||| |||||||||||  || | | ||||| ||||| ||||| ||||||||
Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741

                          
Query: 286 gccgtccaggaagtt 300
            || || ||||||||
Sbjct: 740 accatcaaggaagtt 726
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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 226 cgccttggccacctcctccat 246
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244
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>ref|XM_482858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  cttggacagctcctcgacag 215
            ||||||||||||||||||||
Sbjct: 1413 cttggacagctcctcgacag 1394
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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cgccatcgccttggccacct 239
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  ccttggccacctcctccatc 247
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  ccttggccacctcctccatc 247
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 223     catcgccttggccacctcctccat 246
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245
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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  gtctcgtcagctcctccacc 193
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083
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>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ctcctccatcttggacctgt 257
             ||||||||||||||||||||
Sbjct: 32235 ctcctccatcttggacctgt 32254
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>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ctcctccatcttggacctgt 257
              ||||||||||||||||||||
Sbjct: 203840 ctcctccatcttggacctgt 203859
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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cgccatcgccttggccacct 239
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11
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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aaagttacactcttatcaaa 42
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361
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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 110   tttacaacacagcgaaaacgaacaaata 137
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
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>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cgccatcgccttggccacct 239
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166471

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tttttcctttttgcacagat 22
             ||||||||||||||||||||
Sbjct: 71324 tttttcctttttgcacagat 71343
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>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cgccatcgccttggccacct 239
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56
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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aaagttacactcttatcaaa 42
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010
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>emb|AL732370.10| Mouse DNA sequence from clone RP23-413I21 on chromosome X, complete
              sequence
          Length = 199391

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 7      tcctttttgcacagataaagttac 30
              |||||||| |||||||||||||||
Sbjct: 153252 tccttttttcacagataaagttac 153229
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 196      cttggacagctcctcgacag 215
                ||||||||||||||||||||
Sbjct: 22995444 cttggacagctcctcgacag 22995425
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    cgccttggccacctcctcca 245
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    cttggacagctcctcgacag 215
              ||||||||||||||||||||
Sbjct: 169282 cttggacagctcctcgacag 169263
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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    acagataaagttacactctt 36
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   cttggacagctcctcgacag 215
             ||||||||||||||||||||
Sbjct: 55172 cttggacagctcctcgacag 55153
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     ccgccatcgccttggccacc 238
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     cgccttggccacctcctcca 245
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986
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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     tcttatcaaagtcgaaaaca 52
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,928,847
Number of Sequences: 3902068
Number of extensions: 2928847
Number of successful extensions: 52418
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52161
Number of HSP's gapped (non-prelim): 250
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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