ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06h02 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -2 Query: 391 SKTQGNALSLGDKITLKQK 335 +K+QG ALSLGDKI L QK Sbjct: 931 AKSQGMALSLGDKINLSQK 949
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -2 Query: 391 SKTQGNALSLGDKITLKQK 335 +K+QG ALSLGDKI L QK Sbjct: 931 AKSQGMALSLGDKINLSQK 949
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -2 Query: 391 SKTQGNALSLGDKITLKQK 335 +K+QG ALSLGDKI L QK Sbjct: 931 AKSQGMALSLGDKINLSQK 949
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -2 Query: 391 SKTQGNALSLGDKITLKQK 335 +K+QG ALSLGDKI+ QK Sbjct: 940 AKSQGMALSLGDKISSSQK 958
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 1 RH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 144 R+ PE ++L TPTQ F +HR+ +K+A + KG + GH Sbjct: 568 RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619
>INP4A_RAT (Q62784) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 939 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 271 LAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VHFLG 384 L + SY Q +++ + +CLP + +CLP + FLG Sbjct: 789 LVRLNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 825
>INP4A_MOUSE (Q9EPW0) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 939 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 235 TSLLAHCTGSMKLAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VHFLG 384 TSL G L + SY Q +++ + +CLP + +CLP + FLG Sbjct: 778 TSLQEGINGE-SLVRVNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 825
>HISX_BLOFL (Q7VQX0) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 437 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -2 Query: 133 RCNDLSQLPSMMRPFLTKNGGVRIDVKFVL 44 RC+ QL + RP N + +DVK++L Sbjct: 14 RCSISEQLTLLTRPINKHNNSIHLDVKYIL 43
>RL1D1_PONPY (Q5RCE6) Ribosomal L1 domain-containing protein 1| Length = 490 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 228 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 121 N +K KER +KR+ ARK+ L D SGD + Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330
>RL1D1_HUMAN (O76021) Ribosomal L1 domain-containing protein 1 (Cellular| senescence-inhibited gene protein) (PBK1 protein) (CATX-11) Length = 490 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 228 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 121 N +K KER +KR+ ARK+ L D SGD + Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330
>INP4A_HUMAN (Q96PE3) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 977 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 271 LAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VHFLG 384 L + SY Q +++ + +CLP + +CLP + FLG Sbjct: 827 LVRLNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 863
>HNK2_XENLA (P42587) Homeobox protein XENK-2| Length = 196 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +1 Query: 1 RH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 114 R+ PE ++L TPTQ F +HR+ K+A S KG+ Sbjct: 92 RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133
>FDHE_AQUAE (O67150) Protein fdhE homolog| Length = 283 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 107 FHDEAFFDKKRWCKNRCEVC 48 F D+ F+ +RW KN C VC Sbjct: 151 FADKVKFEHERWFKNYCPVC 170
>CHMU_ARATH (P42738) Chorismate mutase, chloroplast precursor (EC 5.4.99.5)| (CM-1) Length = 334 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -1 Query: 335 GRQLSCDAICCNCVM*EVHFASFI 264 G CDAIC C+ +H+ F+ Sbjct: 207 GSTAVCDAICLQCLSKRIHYGKFV 230
>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 95 AFFDKKRWCKNRCEV 51 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109
>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 95 AFFDKKRWCKNRCEV 51 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109
>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 377 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -3 Query: 297 CHVGGPLCQ---FHTTGTVG**RCFYNVQKIKERDEKRKIARK 178 C VGGP CQ F VG Y +Q+ K EK+ ++ K Sbjct: 135 CGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDK 177
>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog| B) Length = 269 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +1 Query: 1 RH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDH 126 R+ PE ++L TPTQ F +HR+ K+A + KG+ H Sbjct: 148 RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTH 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,790,804 Number of Sequences: 219361 Number of extensions: 942371 Number of successful extensions: 2429 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2429 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
