ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase... 29 3.8
2XKR2_MOUSE (Q5GH68) XK-related protein 2 (X Kell blood group-rel... 28 8.6

>QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 342

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 92  RKSDGLSHVAFFDPSYILPPYQNNCLNFVLILV*NCTK-LKTLILGQF*DGGSISRQLSL 268
           R SD +SHV F+D    +P    NC      L+ N TK +K  + GQ   GG I   ++ 
Sbjct: 38  RASDEISHVHFYDFEKFIP---KNC-----ALIFNDTKVIKARLFGQKESGGKIELLINR 89

Query: 269 GSTSGAIH 292
              +  IH
Sbjct: 90  ALDAHNIH 97



to top

>XKR2_MOUSE (Q5GH68) XK-related protein 2 (X Kell blood group-related,|
           X-linked)
          Length = 449

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 309 PLRARCSNNQEDYEHSICSTMPTQDR 386
           PLR+  +NN  DY H IC   P  +R
Sbjct: 407 PLRSLFTNNVVDYLHCICCRRPRPER 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,349,117
Number of Sequences: 219361
Number of extensions: 1106345
Number of successful extensions: 2087
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top