ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06g12 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 44.7 bits (104), Expect = 7e-05 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -2 Query: 217 SDHKGAAAGLTAKGIPNSISI 155 SDHKGAAAGLTAKGIPNSISI Sbjct: 842 SDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -2 Query: 217 SDHKGAAAGLTAKGIPNSISI 155 SD+KGAA G+TA+GIPNSISI Sbjct: 843 SDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 37.4 bits (85), Expect = 0.011 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -2 Query: 217 SDHKGAAAGLTAKGIPNSISI 155 SD GAAAG+TAKGIPNSISI Sbjct: 846 SDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 35.4 bits (80), Expect = 0.041 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -2 Query: 217 SDHKGAAAGLTAKGIPNSISI 155 SD KG AAGL+A+GIPNSISI Sbjct: 850 SDLKGDAAGLSARGIPNSISI 870
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 211 HKGAAAGLTAKGIPNSISI 155 H+ + GLT KGIPNSISI Sbjct: 846 HRSSEEGLTFKGIPNSISI 864
>DUS8_HUMAN (Q13202) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Dual specificity protein phosphatase hVH-5) Length = 625 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 216 PTTRAPLPGLPPRASPTASPFNLSHRQPWMNKGRSP 109 P APLP LPP S +A+ N + R+ ++ G P Sbjct: 323 PAAGAPLPRLPPPTSESAATGNAAAREGGLSAGGEP 358
>DTX1_MOUSE (Q61010) Protein deltex-1 (Deltex-1) (Deltex1) (mDTX1) (FXI-T1)| Length = 627 Score = 28.9 bits (63), Expect = 3.8 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = -3 Query: 216 PTTRAPLPGLPPRA------SPTASPFNLSHRQPWMNKGRSPRTKL 97 PT AP PG+PPR+ +PT NLS P + S R + Sbjct: 273 PTEPAPPPGVPPRSPSAPNGAPTPGQNNLSRPGPQRSTSVSARASI 318
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 28.5 bits (62), Expect = 5.0 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = -3 Query: 216 PTTRAPLPGLPPRASPTASPFN-LSHRQPWMNKGRSP 109 P +AP P PP SP SP + H+QP +G P Sbjct: 12 PPPQAPSPMAPPSQSPAPSPHSPYPHQQPGPLQGPPP 48
>Y2172_STRP8 (P60362) UPF0297 protein spyM18_2172| Length = 89 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 93 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 218 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y2114_STRP1 (P68886) UPF0297 protein SPy2114/M5005_Spy1797| Length = 89 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 93 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 218 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1798_STRP3 (P60361) UPF0297 protein SpyM3_1798/SPs1796| Length = 89 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 93 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 218 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1796_STRP6 (Q5X9I2) UPF0297 protein M6_Spy1796| Length = 89 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 93 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 218 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1781_STRPM (Q48QW9) UPF0297 protein M28_Spy1781| Length = 89 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 93 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 218 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -2 Query: 211 HKGAAAGLTAKGIPNSISI 155 H + GLT +GIPNSISI Sbjct: 846 HPSSKEGLTFRGIPNSISI 864
>CF146_MOUSE (Q9D9W6) Protein C6orf146 homolog| Length = 419 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 216 PTTRAPLPGLPPRASPTASPFNLSHRQPWMNKGRSPRTK 100 P R LPPR+ SP LS + +G+ PRTK Sbjct: 343 PMARVVSRCLPPRSPMPVSPIPLSFPENPREEGKVPRTK 381
>SYR_RHILO (Q98LC0) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 585 Score = 27.7 bits (60), Expect = 8.4 Identities = 20/58 (34%), Positives = 25/58 (43%) Frame = +2 Query: 8 WEANLLYLFGLKSNC*HSTVTDTHYTNLSTSFVRGERPLFIHGCRWLKLNGDAVGDAL 181 W+A+L L G N STV TN+ P+ + CR G VGDAL Sbjct: 99 WQAHLSALLGDGRNYGRSTVGAGRKTNVEYVSANPTGPMHVGHCR-----GAVVGDAL 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,668,563 Number of Sequences: 219361 Number of extensions: 640799 Number of successful extensions: 2214 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2212 length of database: 80,573,946 effective HSP length: 48 effective length of database: 70,044,618 effective search space used: 1681070832 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
