ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEF2_COXBU (Q83AK6) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 30 1.7
2SYGA_RICCN (Q92G10) Glycyl-tRNA synthetase alpha chain (EC 6.1.1... 28 6.3
3SYGA_RICPR (Q9ZCB0) Glycyl-tRNA synthetase alpha chain (EC 6.1.1... 28 6.3

>DEF2_COXBU (Q83AK6) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) (Polypeptide|
           deformylase 2)
          Length = 209

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 122 IEGCSSIYARFGIGSKEIHLLLSVWVY 42
           IEGC S+  + G+  + +H+ L+ W+Y
Sbjct: 98  IEGCLSVPGKVGVVERYVHVELTAWLY 124



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>SYGA_RICCN (Q92G10) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase alpha chain) (GlyRS)
          Length = 288

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   LQHSILPG*NRLHIHPNRQQQVDLLATNTKPSIDR*ASLY 122
           +Q S  PG +R  +HPNR Q         KPS D    LY
Sbjct: 56  VQPSRRPGDSRYGMHPNRMQHYYQFQVILKPSPDNIQELY 95



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>SYGA_RICPR (Q9ZCB0) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase alpha chain) (GlyRS)
          Length = 289

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   LQHSILPG*NRLHIHPNRQQQVDLLATNTKPSIDR*ASLY 122
           +Q S  PG +R  +HPNR Q         KPS D    LY
Sbjct: 56  VQPSRRPGDSRYGMHPNRMQHYYQFQVILKPSPDNIQDLY 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,617,257
Number of Sequences: 219361
Number of extensions: 731910
Number of successful extensions: 1654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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