ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06g09 |
|---|---|
| Clone Library Name | barley_pub |
>FHAB_BORPE (P12255) Filamentous hemagglutinin| Length = 3590 Score = 30.8 bits (68), Expect = 0.86 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +2 Query: 38 ITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTVERMHHLLD 175 + A++YF+ L SLTA N S W ++T E + +LLD Sbjct: 1907 VRTVSAMEYFKTPLPVSLTALDNRAGLSPATWNFQSTYELLDYLLD 1952
>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1| (RalBP1-interacting protein 1) Length = 743 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = -2 Query: 305 VKEQPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFSSL 126 V EQP + G G P +K+ P +P +Q +PE + SS+ + FS Sbjct: 328 VGEQPGEVGYSGSPAEAPPSKS------------PSMPSLNQTWPELNQSSEQWETFSER 375 Query: 125 PSN 117 S+ Sbjct: 376 SSS 378
>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043| Length = 1716 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -2 Query: 296 QPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFS 132 +P +GGGP R + R + A R+TLP Q P + + Y GFS Sbjct: 1242 KPEGGSEGGGPGGR-QDHDRSKNAYLQRSTLPRSQLPPQTRPAGNKDEEEYEGFS 1295
>FOG_DROME (P40795) Protein folded gastrulation precursor [Contains: Protein| folded gastrulation; G protein-coupled receptor ligand] Length = 730 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = -2 Query: 266 PTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFSSLPSNVNINLCWP*V 87 PT VK + LAG + P P GD DY +D+ S ++ S +P+ + L P V Sbjct: 90 PTDLVKQELI--LAGGSNGSPPPPPIGDYDYGDDEESEEIVYDLSVIPTAMQDGLP-PSV 146 Query: 86 RIGD 75 GD Sbjct: 147 GTGD 150
>5S_PROFR (Q70AC7) Methylmalonyl-CoA carboxyltransferase 5S subunit (EC| 2.1.3.1) (Transcarboxylase 5S subunit) Length = 505 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 60 NISKIISNSHSRPTQINVHIRRETGKTGIQLRGCI 164 +I K I +++ + TQIN+H TG T + L I Sbjct: 197 DIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 231
>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1107 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 43 CGHGGAIFPRLSPILTHGQHKLMFTFE 123 C +FP LS + H QH L+ +FE Sbjct: 30 CALSSPLFPELSKLDAHSQHHLLASFE 56
>SYD_RHORT (Q2RSM3) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 606 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -2 Query: 266 PTSRVKTKTRQELAGTWRATLPLLPEGDQDYPED 165 PT ++ K + + LP+ GDQ+YPED Sbjct: 90 PTGAIEVKAQTVEVLSQSEVLPMQVAGDQEYPED 123
>ESCA_PHOPA (Q02026) Escargot/snail protein homolog (Fragment)| Length = 46 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 48 PWRCNISKIISNSHSRPTQINVHIRRETGKTGIQLRGC 161 P RC K+ + SRP +N HIR TG+ + C Sbjct: 7 PCRC---KLCGKAFSRPWLLNGHIRTHTGEKPFSCQHC 41
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -2 Query: 329 AWARNPQLVKEQPAKAGQGGGPTSRVKTKTRQELAG 222 AWAR P + PA G GG TS+ R AG Sbjct: 152 AWARGP-TTRTGPASRGGRGGATSKSTAGARSSTAG 186
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 191 EGDQDYPEDDASSQLYSGFSSLPS 120 E D D EDD SQ SG S+ PS Sbjct: 2171 EDDNDNEEDDDDSQAESGLSAAPS 2194
>ORC3_SCHPO (Q10067) Origin recognition complex subunit 3| Length = 690 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 17 HSLSPLHITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTVERM 160 H +SPLH+T V FQ +++ L GD ++ N VE+M Sbjct: 307 HLISPLHLTTLRTVPSFQRHIEQRLEI---------GDLESINYVEKM 345
>POL2_RRVC (Q6W8W3) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1106 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 43 CGHGGAIFPRLSPILTHGQHKLMFTFE 123 C +FP LS + H QH L+ +FE Sbjct: 30 CPLSSPLFPELSKLDAHSQHHLLASFE 56
>SRW1_SCHPO (O13286) WD-repeat-containing protein srw1 (Suppressor of rad/wee1)| Length = 556 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 203 PLLPEGDQDYPEDDASSQLYSGFSSL 126 P EGD+ P DAS++L++GF+ + Sbjct: 68 PRTNEGDRFIPSRDASTELWTGFTKV 93
>PLXB3_MOUSE (Q9QY40) Plexin-B3 precursor (Plexin-6)| Length = 1892 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 326 WARNPQLVKEQPAKAGQGGGPTSRVK 249 + NPQLV+ +P+ + +GGG RV+ Sbjct: 990 YTANPQLVEAEPSVSFRGGGRVIRVR 1015 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,745,954 Number of Sequences: 219361 Number of extensions: 853908 Number of successful extensions: 2703 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2607 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2703 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
