>TMC1_MOUSE (Q8R4P5) Transmembrane cochlear-expressed protein 1 (Beethoven|
           protein) (Deafness protein)
          Length = 757

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 67  SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAPQCSASKTTTLFRYDNAYL 222
           S F PS   +P  ++ R H+S Y Q W V  CN P+    K +   R +N YL
Sbjct: 588 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 634

>TMC1_HUMAN (Q8TDI8) Transmembrane cochlear-expressed protein 1|
          Length = 760

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 67  SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAPQCSASKTTTLFRYDNAYL 222
           S F PS   +P  ++ R H+S Y Q W V  CN P+    K +   R +N YL
Sbjct: 591 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 637

>EXPA6_ARATH (Q38865) Alpha-expansin 6 precursor (AtEXPA6) (At-EXP6) (AtEx6)|
           (Ath-ExpAlpha-1.8)
          Length = 257

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 110 CTENTHHPTDNGGWCSAMHPN 172
           C  N   P+DNGGWC+   P+
Sbjct: 110 CPPNFAQPSDNGGWCNPPRPH 130

>AT10D_HUMAN (Q9P241) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)|
           (ATPVD)
          Length = 1426

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
 Frame = +1

Query: 91  RVPAFSVHRKHSSPYRQRWVVQCNAPQCSASK---TTTLFRYDNAYLLN------PGSP 240
           R+P FS   K +SP  +     C +PQCS+S    T T  ++ +A LLN      PG P
Sbjct: 659 RLPLFS-RMKPASPVEEEVSQVCESPQCSSSSACCTETEKQHGDAGLLNGKAESLPGQP 716

>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)|
          Length = 1531

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 155  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 54
            C  H+C+ G +C     +   LC   Y G+  EIPPA
Sbjct: 1087 CKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEIPPA 1123

>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple|
            epidermal growth factor-like domains 4)
          Length = 1534

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 155  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPP 57
            C  HRC+ G +C     +   LC   Y G+  EIPP
Sbjct: 1087 CRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEIPP 1122

>EXPA4_ARATH (O48818) Alpha-expansin 4 precursor (AtEXPA4) (At-EXP4) (AtEx4)|
           (Ath-ExpAlpha-1.6)
          Length = 257

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 110 CTENTHHPTDNGGWCSAMHPNVRHPKQQHY 199
           C  N   P+DNGGWC        +P ++H+
Sbjct: 110 CPPNLAQPSDNGGWC--------NPPREHF 131

>METE_SCHPO (Q9UT19) Probable|
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 764

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 184 WMPNIGVHCTAPPTVVGRV-----MSVFCAQKMQ-VLSVMRGGKLKYPLQVINWN 38
           W+ + G  C  PP +VG V     M+V  +Q  Q + S    G L  P+ ++ W+
Sbjct: 519 WVQSYGSRCVRPPIIVGDVYRPAPMTVKESQYAQSITSKPMKGMLTAPITILRWS 573

>EXP16_ARATH (Q9M2S9) Alpha-expansin 16 precursor (AtEXPA16) (At-EXP16) (AtEx16)|
           (Ath-ExpAlpha-1.7)
          Length = 260

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 110 CTENTHHPTDNGGWCS 157
           C  N   P+DNGGWC+
Sbjct: 113 CPPNLAQPSDNGGWCN 128

>RBFA_CHLCV (Q823F3) Ribosome-binding factor A|
          Length = 120

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 170 NVRHPKQQHYFVTITRICL 226
           +V+HPK  + ++T+TR+CL
Sbjct: 25  DVKHPKISNQWITVTRVCL 43

>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple|
            epidermal growth factor-like domains 4)
          Length = 1531

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 155  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 54
            C  H+C+ G +C     +   LC   Y G+  EIPPA
Sbjct: 1087 CKDHQCQNGAQCVDEINSYACLCAEGYSGQLCEIPPA 1123

>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)|
           (AtEx17) (Ath-ExpAlpha-1.13)
          Length = 255

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 110 CTENTHHPTDNGGWCSAMHPNVRHPKQQHYFVTITR 217
           C  N    +DNGGWC+   P+      Q  F+TI +
Sbjct: 108 CPPNFAQASDNGGWCNPPRPH--FDMAQPAFLTIAK 141

>TSF_ARATH (Q9S7R5) Protein TWIN SISTER of FT (TFL1-like protein)|
          Length = 175

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 74  SSPHNREYLHFLCTE 118
           S+PH REYLH+L T+
Sbjct: 78  SNPHQREYLHWLVTD 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,717,981
Number of Sequences: 219361
Number of extensions: 992849
Number of successful extensions: 2480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2479
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)