Clone Name | rbastl06g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103745.1| Zea mays PCO097601 mRNA sequence Length = 1567 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 163 ctatatatttctataaacaactc 185 ||||||||||||||||||||||| Sbjct: 1507 ctatatatttctataaacaactc 1485
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 21 aaaattggtacaaattttatgtcaat 46 |||||| ||||||||||||||||||| Sbjct: 204055 aaaatttgtacaaattttatgtcaat 204080
>gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, complete sequence Length = 206194 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 aaattttatgtcaatttgtaagaag 56 |||||||||||||| |||||||||| Sbjct: 111546 aaattttatgtcaaattgtaagaag 111570
>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence Length = 176296 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 19 ttaaaattggtacaaattttatgtcaatt 47 ||||||||||||||| |||||||||||| Sbjct: 62102 ttaaaattggtacaagatttatgtcaatt 62130
>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence Length = 169553 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 tacaaattttatgtcaatttg 49 ||||||||||||||||||||| Sbjct: 31376 tacaaattttatgtcaatttg 31356
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 19 ttaaaattggtacaaattttatgtcaatt 47 ||||||||||||||| |||||||||||| Sbjct: 1491548 ttaaaattggtacaagatttatgtcaatt 1491576
>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein Length = 954 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tgattcaactatatatttcta 175 ||||||||||||||||||||| Sbjct: 833 tgattcaactatatatttcta 813
>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end sequence, partial cds Length = 231 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tgattcaactatatatttcta 175 ||||||||||||||||||||| Sbjct: 134 tgattcaactatatatttcta 114
>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds Length = 1152 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tgattcaactatatatttcta 175 ||||||||||||||||||||| Sbjct: 1102 tgattcaactatatatttcta 1082
>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR Length = 165 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tgattcaactatatatttcta 175 ||||||||||||||||||||| Sbjct: 41 tgattcaactatatatttcta 21
>ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 330 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ctccaccaatctcaccaccc 286 |||||||||||||||||||| Sbjct: 48 ctccaccaatctcaccaccc 29
>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete cds Length = 729 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ctccaccaatctcaccaccc 286 |||||||||||||||||||| Sbjct: 100 ctccaccaatctcaccaccc 81
>gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of the complete genome Length = 10809 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 tgattaaaattggtacaaatttta 39 ||||||||| |||||||||||||| Sbjct: 9237 tgattaaaaatggtacaaatttta 9214
>ref|XM_716488.1| Candida albicans SC5314 putative nuclear condensin complex subunit G (CaO19_9190), mRNA Length = 3780 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 agctgattaaaattggtacaaatt 36 |||||||||||| ||||||||||| Sbjct: 3338 agctgattaaaagtggtacaaatt 3361
>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence Length = 157001 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 agaattgattcaactatatatttc 173 |||||||||||||||| ||||||| Sbjct: 41316 agaattgattcaactaaatatttc 41339
>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence Length = 163773 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 agaattgattcaactatatatttc 173 |||||||||||||||| ||||||| Sbjct: 151929 agaattgattcaactaaatatttc 151952
>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone MGC:68557 IMAGE:4031378), complete cds Length = 971 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 tgcgcatgcatacacactgt 213 |||||||||||||||||||| Sbjct: 422 tgcgcatgcatacacactgt 441
>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type, 3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete cds Length = 974 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 tgcgcatgcatacacactgt 213 |||||||||||||||||||| Sbjct: 421 tgcgcatgcatacacactgt 440
>emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 on chromosome 6p21 Contains the SFRS3 for splicing factor arginine/serine-rich (SRP20), the STK38 gene for serine/threonine protein kinase (NDR), the 3' end of a gene for a novel protein (2410004NRIK) and a CpG island, complete sequence Length = 145616 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aaattggtacaaattttatg 41 |||||||||||||||||||| Sbjct: 140140 aaattggtacaaattttatg 140159
>gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, complete cds Length = 6201 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aaaacacttatacaacatca 112 |||||||||||||||||||| Sbjct: 1305 aaaacacttatacaacatca 1286
>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4 Contains the 5' end of a novel gene, complete sequence Length = 27299 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gaatacataataataaatca 337 |||||||||||||||||||| Sbjct: 26365 gaatacataataataaatca 26384
>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the 5' end of a novel gene, the gene for a novel protein similar to opioid growth factor receptor and a CpG island, complete sequence Length = 108253 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 atatatttctataaacaactctgg 188 |||||||||||||||| ||||||| Sbjct: 20311 atatatttctataaactactctgg 20334
>emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 in linkage group 13, complete sequence Length = 173825 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tattaaagctgattaaaatt 26 |||||||||||||||||||| Sbjct: 92592 tattaaagctgattaaaatt 92573
>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16, complete sequence Length = 59017 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ttcaactatatatttctata 177 |||||||||||||||||||| Sbjct: 40475 ttcaactatatatttctata 40456
>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence Length = 184178 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ttcaactatatatttctata 177 |||||||||||||||||||| Sbjct: 181477 ttcaactatatatttctata 181496
>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence Length = 188326 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tacaaattttatgtcaattt 48 |||||||||||||||||||| Sbjct: 115415 tacaaattttatgtcaattt 115434
>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F Length = 309 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aaccaatagagagaattgat 158 |||||||||||||||||||| Sbjct: 139 aaccaatagagagaattgat 120
>gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, complete sequence Length = 131395 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaattggtacaaattttat 40 |||||||||||||||||||| Sbjct: 79690 aaaattggtacaaattttat 79671
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 120 aaataaaagatggatcatgaaccaatag 147 |||||||||||||| || |||||||||| Sbjct: 3398188 aaataaaagatggaacaggaaccaatag 3398161
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tatatttctataaacaactc 185 |||||||||||||||||||| Sbjct: 7680653 tatatttctataaacaactc 7680634
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ctccaccaatctcaccaccc 286 |||||||||||||||||||| Sbjct: 8585799 ctccaccaatctcaccaccc 8585818
>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence Length = 186961 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aatacataataataaatcat 338 |||||||||||||||||||| Sbjct: 52428 aatacataataataaatcat 52447
>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence Length = 162554 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ctgattaaaattggtacaaatttt 38 |||||| ||||||||||||||||| Sbjct: 78485 ctgattcaaattggtacaaatttt 78508
>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94635 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aatacataataataaatcat 338 |||||||||||||||||||| Sbjct: 56035 aatacataataataaatcat 56054
>gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, complete sequence Length = 115682 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 atggatcatgaaccaataga 148 |||||||||||||||||||| Sbjct: 62993 atggatcatgaaccaataga 62974
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ctccaccaatctcaccaccc 286 |||||||||||||||||||| Sbjct: 17994 ctccaccaatctcaccaccc 18013
>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA Length = 2228 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gaatacataataataaatca 337 |||||||||||||||||||| Sbjct: 2170 gaatacataataataaatca 2189
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_C11 Length = 124827 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tatatttctataaacaactc 185 |||||||||||||||||||| Sbjct: 103908 tatatttctataaacaactc 103889
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 120 aaataaaagatggatcatgaaccaatag 147 |||||||||||||| || |||||||||| Sbjct: 38008 aaataaaagatggaacaggaaccaatag 37981
>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full insert sequence Length = 3307 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tatatttctataaacaactc 185 |||||||||||||||||||| Sbjct: 3149 tatatttctataaacaactc 3130
>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full insert sequence Length = 786 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ctccaccaatctcaccaccc 286 |||||||||||||||||||| Sbjct: 144 ctccaccaatctcaccaccc 125
>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence Length = 217265 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 aaacagagcgtgtgcccagc 315 |||||||||||||||||||| Sbjct: 140200 aaacagagcgtgtgcccagc 140219
>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02, full insert sequence Length = 239 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tatatttctataaacaactc 185 |||||||||||||||||||| Sbjct: 78 tatatttctataaacaactc 59
>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 aaacagagcgtgtgcccagc 315 |||||||||||||||||||| Sbjct: 79541 aaacagagcgtgtgcccagc 79522
>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete sequence Length = 132296 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 attaaagctgattaaaattg 27 |||||||||||||||||||| Sbjct: 116433 attaaagctgattaaaattg 116452
>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11 Length = 156200 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tacaaattttatgtcaattt 48 |||||||||||||||||||| Sbjct: 70126 tacaaattttatgtcaattt 70107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,085,642 Number of Sequences: 3902068 Number of extensions: 4085642 Number of successful extensions: 85817 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85642 Number of HSP's gapped (non-prelim): 175 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)