ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103745.1| Zea mays PCO097601 mRNA sequence 46 0.076
2emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 44 0.30
3gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, com... 42 1.2
4gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete ... 42 1.2
5gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence 42 1.2
6gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 42 1.2
7emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein 42 1.2
8gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORD... 42 1.2
9gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordei... 42 1.2
10gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR 42 1.2
11ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
12gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 4.7
13gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of ... 40 4.7
14ref|XM_716488.1| Candida albicans SC5314 putative nuclear conden... 40 4.7
15gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 4.7
16gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome... 40 4.7
17gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRN... 40 4.7
18gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 4.7
19emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 o... 40 4.7
20gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, comple... 40 4.7
21emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 4.7
22emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 4.7
23emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 i... 40 4.7
24emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 i... 40 4.7
25emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 4.7
26gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, com... 40 4.7
27dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region,... 40 4.7
28gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, comple... 40 4.7
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
32gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 4.7
33gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 40 4.7
34gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 4.7
35gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, comp... 40 4.7
36dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
37gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 4.7
38dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
39dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
40dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
41dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
42gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complet... 40 4.7
43dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
44gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, comple... 40 4.7
45emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chr... 40 4.7
46dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.7

>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 163  ctatatatttctataaacaactc 185
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485



to top

>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 21     aaaattggtacaaattttatgtcaat 46
              |||||| |||||||||||||||||||
Sbjct: 204055 aaaatttgtacaaattttatgtcaat 204080



to top

>gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, complete sequence
          Length = 206194

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 32     aaattttatgtcaatttgtaagaag 56
              |||||||||||||| ||||||||||
Sbjct: 111546 aaattttatgtcaaattgtaagaag 111570



to top

>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence
          Length = 176296

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 19    ttaaaattggtacaaattttatgtcaatt 47
             |||||||||||||||  ||||||||||||
Sbjct: 62102 ttaaaattggtacaagatttatgtcaatt 62130



to top

>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence
          Length = 169553

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    tacaaattttatgtcaatttg 49
             |||||||||||||||||||||
Sbjct: 31376 tacaaattttatgtcaatttg 31356



to top

>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 19      ttaaaattggtacaaattttatgtcaatt 47
               |||||||||||||||  ||||||||||||
Sbjct: 1491548 ttaaaattggtacaagatttatgtcaatt 1491576



to top

>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 tgattcaactatatatttcta 175
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813



to top

>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 tgattcaactatatatttcta 175
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114



to top

>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  tgattcaactatatatttcta 175
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082



to top

>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 tgattcaactatatatttcta 175
           |||||||||||||||||||||
Sbjct: 41  tgattcaactatatatttcta 21



to top

>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ctccaccaatctcaccaccc 286
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29



to top

>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ctccaccaatctcaccaccc 286
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81



to top

>gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of the complete genome
          Length = 10809

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   tgattaaaattggtacaaatttta 39
            ||||||||| ||||||||||||||
Sbjct: 9237 tgattaaaaatggtacaaatttta 9214



to top

>ref|XM_716488.1| Candida albicans SC5314 putative nuclear condensin complex subunit G
            (CaO19_9190), mRNA
          Length = 3780

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 13   agctgattaaaattggtacaaatt 36
            |||||||||||| |||||||||||
Sbjct: 3338 agctgattaaaagtggtacaaatt 3361



to top

>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   agaattgattcaactatatatttc 173
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339



to top

>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    agaattgattcaactatatatttc 173
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952



to top

>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 tgcgcatgcatacacactgt 213
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441



to top

>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 tgcgcatgcatacacactgt 213
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440



to top

>emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 on chromosome 6p21 Contains the
              SFRS3 for splicing factor arginine/serine-rich (SRP20), the
              STK38 gene for serine/threonine protein kinase (NDR), the
              3' end of a gene for a novel protein (2410004NRIK) and a
              CpG island, complete sequence
          Length = 145616

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     aaattggtacaaattttatg 41
              ||||||||||||||||||||
Sbjct: 140140 aaattggtacaaattttatg 140159



to top

>gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, complete cds
          Length = 6201

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   aaaacacttatacaacatca 112
            ||||||||||||||||||||
Sbjct: 1305 aaaacacttatacaacatca 1286



to top

>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   gaatacataataataaatca 337
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384



to top

>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   atatatttctataaacaactctgg 188
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334



to top

>emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 in linkage group 13,
             complete sequence
          Length = 173825

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tattaaagctgattaaaatt 26
             ||||||||||||||||||||
Sbjct: 92592 tattaaagctgattaaaatt 92573



to top

>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   ttcaactatatatttctata 177
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456



to top

>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ttcaactatatatttctata 177
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496



to top

>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tacaaattttatgtcaattt 48
              ||||||||||||||||||||
Sbjct: 115415 tacaaattttatgtcaattt 115434



to top

>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F
          Length = 309

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 139 aaccaatagagagaattgat 158
           ||||||||||||||||||||
Sbjct: 139 aaccaatagagagaattgat 120



to top

>gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, complete sequence
          Length = 131395

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aaaattggtacaaattttat 40
             ||||||||||||||||||||
Sbjct: 79690 aaaattggtacaaattttat 79671



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 120     aaataaaagatggatcatgaaccaatag 147
               |||||||||||||| || ||||||||||
Sbjct: 3398188 aaataaaagatggaacaggaaccaatag 3398161



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     tatatttctataaacaactc 185
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     ctccaccaatctcaccaccc 286
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818



to top

>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   aatacataataataaatcat 338
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447



to top

>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    ctgattaaaattggtacaaatttt 38
             |||||| |||||||||||||||||
Sbjct: 78485 ctgattcaaattggtacaaatttt 78508



to top

>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   aatacataataataaatcat 338
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054



to top

>gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, complete sequence
          Length = 115682

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   atggatcatgaaccaataga 148
             ||||||||||||||||||||
Sbjct: 62993 atggatcatgaaccaataga 62974



to top

>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ctccaccaatctcaccaccc 286
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013



to top

>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  gaatacataataataaatca 337
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189



to top

>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    tatatttctataaacaactc 185
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889



to top

>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 120   aaataaaagatggatcatgaaccaatag 147
             |||||||||||||| || ||||||||||
Sbjct: 38008 aaataaaagatggaacaggaaccaatag 37981



to top

>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  tatatttctataaacaactc 185
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130



to top

>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ctccaccaatctcaccaccc 286
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125



to top

>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence
          Length = 217265

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    aaacagagcgtgtgcccagc 315
              ||||||||||||||||||||
Sbjct: 140200 aaacagagcgtgtgcccagc 140219



to top

>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02, full
           insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 tatatttctataaacaactc 185
           ||||||||||||||||||||
Sbjct: 78  tatatttctataaacaactc 59



to top

>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence
          Length = 187362

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   aaacagagcgtgtgcccagc 315
             ||||||||||||||||||||
Sbjct: 79541 aaacagagcgtgtgcccagc 79522



to top

>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete
              sequence
          Length = 132296

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      attaaagctgattaaaattg 27
              ||||||||||||||||||||
Sbjct: 116433 attaaagctgattaaaattg 116452



to top

>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11
          Length = 156200

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tacaaattttatgtcaattt 48
             ||||||||||||||||||||
Sbjct: 70126 tacaaattttatgtcaattt 70107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,085,642
Number of Sequences: 3902068
Number of extensions: 4085642
Number of successful extensions: 85817
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85642
Number of HSP's gapped (non-prelim): 175
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top