ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2 31 0.67
2SEY1_YARLI (Q6C3B0) Protein SEY1 31 0.87
3BRAF_PSEAE (P21629) High-affinity branched-chain amino acid tran... 30 1.5
4VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF) 28 4.3
5FUTSC_DROME (Q9W596) Microtubule-associated protein futsch 28 5.7
6PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor ga... 28 7.4
7TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.... 27 9.7

>OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2|
          Length = 315

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 199 ACGSLRRGSASSWQSVLTCCVSHVGVVGLMCLFFG----RYMR-GAEQS 68
           A   LR  S   W+   + C SH+ VV   CLFFG     YMR G+E++
Sbjct: 225 AAAVLRIRSVEGWKKAFSTCGSHLTVV---CLFFGTGIFNYMRLGSEEA 270



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>SEY1_YARLI (Q6C3B0) Protein SEY1|
          Length = 938

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 118 RQHRHVTRNTLKRSAKTTPTLSSASHKLSYSELLYSAATVSQHRNKSAGGSVAGV 282
           R+H+ V R  +   A+ +   SS  HK + +     A   SQ   KS  GS AG+
Sbjct: 109 REHKPVERKPVSSPAEKSIPASSPVHKAAPTPAASHAVPTSQKSAKSTPGSYAGI 163



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>BRAF_PSEAE (P21629) High-affinity branched-chain amino acid transport|
           ATP-binding protein braF
          Length = 255

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 58  RSYKTVLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHKLSYSELLYSAATV 237
           R+++ V L        N  V QHRH+  N L    KT     S    + Y+        +
Sbjct: 84  RTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNL 143

Query: 238 SQHRNKSAG 264
           ++  N+SAG
Sbjct: 144 TEFANRSAG 152



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>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 111 ISPTTPTCDTQHVKTLCQD 167
           +SP T TC + HVK +CQ+
Sbjct: 305 VSPCTRTCQSLHVKEVCQE 323



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>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 TRNTLKRSAKTTPTLSSASHKLSYSELLYSAATVSQH 246
           TR +LK + + TP   SAS+K +    + SAA   QH
Sbjct: 506 TRKSLKSAIEATPAPPSASYKTTKFSPVASAALAVQH 542



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>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma|
           coactivator 1-alpha (PPAR gamma coactivator 1-alpha)
           (PPARGC-1-alpha) (PGC-1-alpha)
          Length = 796

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 31  APVR*TMSPRSYKTVLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHKLSYS 210
           +P R ++SP        R    R  + S  QHR  +R+   RS   +P   S+S    YS
Sbjct: 543 SPCRDSVSPPK-SLFSQRPQRMRSRSRSFSQHRSCSRSPYSRSRSRSPGSRSSSRSCYYS 601

Query: 211 E 213
           E
Sbjct: 602 E 602



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>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1033

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 73  VLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHK 198
           VL  +YN   TN  VR+ R+ T  T +RSA      S+ S +
Sbjct: 163 VLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRR 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,806,025
Number of Sequences: 219361
Number of extensions: 640577
Number of successful extensions: 1854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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