Clone Name | rbastl06g04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 267 ctcagtagctggtgtgctgctgccagctctggtgaga 303 ||||||||| ||||||||||||||| | ||||||||| Sbjct: 87259 ctcagtagccggtgtgctgctgccacccctggtgaga 87223
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 267 ctcagtagctggtgtgctgctgccagctctggtgaga 303 ||||||||| ||||||||||||||| | ||||||||| Sbjct: 28007094 ctcagtagccggtgtgctgctgccacccctggtgaga 28007058
>dbj|AK120605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150C07, full insert sequence Length = 4157 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 267 ctcagtagctggtgtgctgctgccagctctggtgaga 303 ||||||||| ||||||||||||||| | ||||||||| Sbjct: 2777 ctcagtagccggtgtgctgctgccacccctggtgaga 2741
>dbj|AK066026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044F07, full insert sequence Length = 3108 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 267 ctcagtagctggtgtgctgctgccagctctggtgaga 303 ||||||||| ||||||||||||||| | ||||||||| Sbjct: 2773 ctcagtagccggtgtgctgctgccacccctggtgaga 2737
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cagtgagccagcaccgcaaca 253 ||||||||||||||||||||| Sbjct: 1078300 cagtgagccagcaccgcaaca 1078280
>emb|Z73905.1|CEC32C4 Caenorhabditis elegans Cosmid C32C4, complete sequence Length = 31786 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 aaactttcagaaatcagaaaaaagc 32 |||||||||||||||| |||||||| Sbjct: 17610 aaactttcagaaatcacaaaaaagc 17586
>gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 231716 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 177 cctctcctcagcgagccacaagctcagc 204 |||||||||||| | ||||||||||||| Sbjct: 98437 cctctcctcagctacccacaagctcagc 98464
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland Research Institute) complete sequence Length = 232401 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 gacaacaccgacatgtgacacgca 142 |||||||||||| ||||||||||| Sbjct: 1714 gacaacaccgacctgtgacacgca 1691
>gb|AF043699.2| Caenorhabditis elegans cosmid K02F2, complete sequence Length = 39352 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tttcagaaatcagaaaaaag 31 |||||||||||||||||||| Sbjct: 9214 tttcagaaatcagaaaaaag 9195
>emb|AL645944.11| Human DNA sequence from clone RP11-179G8 on chromosome 1, complete sequence Length = 191247 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aaactttcagaaatcagaaaaaag 31 |||||||||||||| ||||||||| Sbjct: 34391 aaactttcagaaattagaaaaaag 34414
>emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on chromosome 13, complete sequence Length = 121019 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gtgtgctgctgccagctctg 297 |||||||||||||||||||| Sbjct: 53752 gtgtgctgctgccagctctg 53733
>gb|AC079223.11| Mus musculus chromosome 1, clone RP22-318M10, complete sequence Length = 137729 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aagctcagctactctgagct 215 |||||||||||||||||||| Sbjct: 36948 aagctcagctactctgagct 36929
>dbj|AB118237.1| Rattus norvegicus rGGPS1 gene for geranylgeranyl diphosphate synthase1, complete cds, alternative splicing Length = 13601 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 gacaacaccgacatgtgacacgca 142 |||||||||||| ||||||||||| Sbjct: 5463 gacaacaccgacctgtgacacgca 5486
>gb|AY107024.1| Zea mays PCO127729 mRNA sequence Length = 576 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 acacgcaacacgttaaaacgctct 159 |||||||||| ||||||||||||| Sbjct: 445 acacgcaacatgttaaaacgctct 422
>gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, complete sequence Length = 169324 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aagctcagctactctgagct 215 |||||||||||||||||||| Sbjct: 58041 aagctcagctactctgagct 58022 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,866,748 Number of Sequences: 3902068 Number of extensions: 2866748 Number of successful extensions: 46912 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46866 Number of HSP's gapped (non-prelim): 46 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)