ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06g02 |
|---|---|
| Clone Library Name | barley_pub |
>ETF1_MSEPV (Q9YVX9) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 674 Score = 31.2 bits (69), Expect = 0.75 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +2 Query: 23 IRRLHNKLIHSSRNAKYTRHRIFYKNIRRLHNKLIHSSKNAND 151 I +L++ L+ ++N KY + I + RL+ +L+ ++KN ND Sbjct: 84 ISKLYDSLLLLNKNDKYNLNNIEFTTRSRLNEELLGTNKNIND 126
>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (AtATM) Length = 3856 Score = 30.8 bits (68), Expect = 0.98 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 56 SRNAKYTRHRIFYKNIRRLHNKLIHSSKNANDTG*GLASHKTWHNKD 196 SR + Y R ++++ LHNKLI S + DT G + W + D Sbjct: 2363 SRRSNYLPPRFLSRSLQALHNKLIASEVSQEDTN-GETAETFWQSDD 2408
>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 618 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 18/71 (25%) Frame = -3 Query: 197 CPCCARFYGM---LALIQCHLHSC*NVSICCGAAE---------------YSCKKFYDEC 72 C C FYG+ ++ + C C N +C G A+ +C+K D C Sbjct: 298 CTCPRGFYGLRCEVSGVTCADGPCFNGGLCVGGADPDSAYICHCPPGFQGSNCEKRVDRC 357 Query: 71 ILHSC*NVSIC 39 L C N +C Sbjct: 358 SLQPCRNGGLC 368
>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor| Length = 2703 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -3 Query: 98 SCKKFYDECILHSC*NVSICC-GAAEYSCK 12 +C++ YD+C+ H C N C G ++Y+C+ Sbjct: 289 NCEQNYDDCLGHLCQNGGTCIDGISDYTCR 318 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%) Frame = -3 Query: 155 QCHLHSC*NVSICC------------GAAEYSCKKFYDECILHSC*NVSICCGAAE-YSC 15 +CH + C N + C G C+K DECI C N +C Y C Sbjct: 680 ECHSNPCNNGATCIDGINSYKCQCVPGFTGQHCEKNVDECISSPCANNGVCIDQVNGYKC 739 Query: 14 K 12 + Sbjct: 740 E 740
>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.9 bits (63), Expect = 3.7 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 17/79 (21%) Frame = -3 Query: 197 CPCCARFYGMLA---LIQCHLHSC*NVSICCGAAEYS-------------CKKFYDECIL 66 C C RF G + C C N C +++ C++ D+C Sbjct: 207 CQCPQRFTGQHCDSPYVPCAPSPCVNGGTCRQTGDFTSECHCLPGFEGSNCERNIDDCPN 266 Query: 65 HSC*NVSICC-GAAEYSCK 12 H C N +C G Y+C+ Sbjct: 267 HKCQNGGVCVDGVNTYNCR 285
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 28.5 bits (62), Expect = 4.9 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 18/71 (25%) Frame = -3 Query: 197 CPCCARFYGM---LALIQCHLHSC*NVSICCGAAE---------------YSCKKFYDEC 72 C C FYG+ ++ + C C N +C G + +C+K D C Sbjct: 296 CACPRGFYGLRCEVSGVTCADGPCFNGGLCVGGEDPDSAYVCHCPPGFQGSNCEKRVDRC 355 Query: 71 ILHSC*NVSIC 39 L C N +C Sbjct: 356 SLQPCQNGGLC 366
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 28.1 bits (61), Expect = 6.4 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Frame = -3 Query: 152 CHLHSC*NVSICC----GAAEYSCKKFYDECILHSC*NVSICC-GAAEYSCK 12 CH + C G +C D+C+ H C N +C G Y+C+ Sbjct: 979 CHAQEGEDAGFTCSCPSGFEGLTCGMNTDDCVKHDCVNGGVCVDGIGNYTCQ 1030
>Y244_BUCAP (Q8K9R6) UPF0125 protein BUsg244| Length = 95 Score = 28.1 bits (61), Expect = 6.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 11 FYKNIRRLHNKLIHSSRNAKYTRHRIFYKNI 103 FYKN ++NKL+H + N K Y+N+ Sbjct: 47 FYKNNVGIYNKLVHLNENVKNGDRIEIYRNL 77
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Frame = -3 Query: 152 CHLHSC*NVSICC----GAAEYSCKKFYDECILHSC*NVSICC-GAAEYSCK 12 CH + C G +C D+C+ H+C N +C G Y+C+ Sbjct: 979 CHAQEGEDAGFTCSCPSGFEGPTCGVDTDDCVKHACVNGGVCVDGVGNYTCQ 1030
>CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor| Length = 1406 Score = 27.7 bits (60), Expect = 8.3 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = -3 Query: 152 CHLHSC*NVSIC-CGAAEYSCKKFYDECILHSC*NVSIC-CGAAEYSC 15 CH V IC G A C+ +DEC C N ++C G YSC Sbjct: 125 CHQDPIYPVCICPAGYAGRFCEIDHDECASSPCQNGAVCQDGIDGYSC 172
>RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) (Radiation sensitivity protein 18) Length = 487 Score = 27.7 bits (60), Expect = 8.3 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 197 CPCCARFYGMLALIQCHLHSC 135 CP C +FY + AL + HL C Sbjct: 190 CPICQQFYPLKALEKTHLDEC 210 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,835,576 Number of Sequences: 219361 Number of extensions: 600485 Number of successful extensions: 1648 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1645 length of database: 80,573,946 effective HSP length: 53 effective length of database: 68,947,813 effective search space used: 1654747512 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
