ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 42 0.76
2gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21... 40 3.0
3ref|XM_807371.1| Trypanosoma cruzi strain CL Brener kinesin (Tc0... 40 3.0
4ref|XM_811844.1| Trypanosoma cruzi strain CL Brener kinesin (Tc0... 40 3.0
5emb|AL663071.5| Mouse DNA sequence from clone RP23-446K7 on chro... 40 3.0
6gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chrom... 40 3.0
7gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complet... 40 3.0
8gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map... 40 3.0
9gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B... 40 3.0
10gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chrom... 40 3.0
11dbj|AP003070.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.0

>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      aaattttttacaagaatattc 26
              |||||||||||||||||||||
Sbjct: 120049 aaattttttacaagaatattc 120069



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aattttttacaagaatattc 104
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069



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>gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21L17, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 137    aagaatgcaaatgacactggatga 160
              |||||||||||||| |||||||||
Sbjct: 189883 aagaatgcaaatgaaactggatga 189906



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>ref|XM_807371.1| Trypanosoma cruzi strain CL Brener kinesin (Tc00.1047053511293.60)
           partial mRNA
          Length = 5001

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 gcaaatgacactggatgagg 162
           ||||||||||||||||||||
Sbjct: 969 gcaaatgacactggatgagg 988



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>ref|XM_811844.1| Trypanosoma cruzi strain CL Brener kinesin (Tc00.1047053506503.80)
           partial mRNA
          Length = 5010

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 gcaaatgacactggatgagg 162
           ||||||||||||||||||||
Sbjct: 969 gcaaatgacactggatgagg 988



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>emb|AL663071.5| Mouse DNA sequence from clone RP23-446K7 on chromosome 11, complete
             sequence
          Length = 205845

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 49    acattctagcaggaatgcaaaata 72
             |||||| |||||||||||||||||
Sbjct: 89218 acattcaagcaggaatgcaaaata 89195



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>gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chromosome unknown,
             complete sequence
          Length = 227737

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 137   aagaatgcaaatgacactggatga 160
             |||||||||||||| |||||||||
Sbjct: 91014 aagaatgcaaatgaaactggatga 90991



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>gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complete sequence
          Length = 108511

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ataaaattttttacaagaat 22
             ||||||||||||||||||||
Sbjct: 61272 ataaaattttttacaagaat 61291



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>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete sequence
          Length = 188963

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 137    aagaatgcaaatgacactggatga 160
              |||||||||||||| |||||||||
Sbjct: 183310 aagaatgcaaatgaaactggatga 183333



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>gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B15, complete sequence
          Length = 117928

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ttctagcaggaatgcaaaat 71
              ||||||||||||||||||||
Sbjct: 100012 ttctagcaggaatgcaaaat 100031



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>gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chromosome unknown,
             complete sequence
          Length = 193117

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   aagaatgcaaatgacactggatga 160
             |||||||||||||| |||||||||
Sbjct: 54298 aagaatgcaaatgaaactggatga 54321



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>dbj|AP003070.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-4N9, complete
             sequence
          Length = 163905

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   aagaatgcaaatgacactggatga 160
             |||||||||||||| |||||||||
Sbjct: 69145 aagaatgcaaatgaaactggatga 69168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,544,239
Number of Sequences: 3902068
Number of extensions: 2544239
Number of successful extensions: 48340
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48312
Number of HSP's gapped (non-prelim): 28
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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