ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192781.1| Oryza sativa (japonica cultivar-group), predic... 232 8e-58
2dbj|AK121767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
3dbj|AK067422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
6gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Can... 44 0.39
7gb|AC158641.12| Mus musculus 10 BAC RP23-461E22 (Roswell Park Ca... 44 0.39
8ref|XM_360857.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.5
9gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.5
10gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, co... 42 1.5
11gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H... 40 6.1
12gb|AC008031.6| Trypanosoma brucei chromosome 2 clone RPCI93-25N1... 40 6.1
13gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 6.1
14ref|XM_946425.1| Trypanosoma brucei TREU927 autophagocytosis ass... 40 6.1
15emb|AL445668.10| Human DNA sequence from clone RP11-234O23 on ch... 40 6.1
16emb|AL353728.8| Human DNA sequence from clone RP11-402B2 on chro... 40 6.1
17gb|AC107300.6| Homo sapiens 3 BAC RP11-516H5 (Roswell Park Cance... 40 6.1
18gb|AC073840.8| Homo sapiens BAC clone RP11-429O22 from 4, comple... 40 6.1
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
20gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer... 40 6.1
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
22emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1 
>ref|NM_192781.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score =  232 bits (117), Expect = 8e-58
 Identities = 264/313 (84%)
 Strand = Plus / Minus

                                                                        
Query: 133  tcgtcgtcgtcagcttcatctacccactcgactcgagaataatccgccgatttcatcaac 192
            ||||| |||||| ||||||| | |||||||||  |||||||  |||| ||||||||||| 
Sbjct: 2387 tcgtcatcgtcaacttcatcaatccactcgacctgagaataggccgctgatttcatcaag 2328

                                                                        
Query: 193  tcggtcagacccgtcaggtcttccagataggtgggttcattgatcacctgcatcacaaaa 252
            || || || || || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 2327 tcagtaaggccggtgaggtcttccagataggttggttcgttgatcacctgcatcacaaaa 2268

                                                                        
Query: 253  tccaatcctctactcctgtattcacgcactaccgcattggaacatgcgatacagctgctc 312
            ||||  ||||| ||   |||||||  ||  || ||||||||||||||| ||||  |||||
Sbjct: 2267 tccatccctctcctatggtattcagacaacactgcattggaacatgcggtacaattgctc 2208

                                                                        
Query: 313  gaggaatagcccatcagggttaataagttgtactgcgatactgattctcgtatctggtgt 372
            |||||||||||||  ||||||| ||||||||||||||| | |||| |||||||||| || 
Sbjct: 2207 gaggaatagcccaatagggttagtaagttgtactgcgagagtgatcctcgtatctgatgc 2148

                                                                        
Query: 373  ggcaatagaccagacggaccctcactgttcgtgtcagcgatatcccctggagcatgtatc 432
            ||||||||||||   |||||||||||| | ||| |||| || || ||||||||||| |||
Sbjct: 2147 ggcaatagaccaagtggaccctcactgcttgtgccagcaatctctcctggagcatggatc 2088

                         
Query: 433  ccatctggatgat 445
            |||||||||||||
Sbjct: 2087 ccatctggatgat 2075



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 286  gcattggaacatgcgatacagctgctcgaggaat 319
            |||||||||||||| |||||| |||| |||||||
Sbjct: 1202 gcattggaacatgcaatacagttgcttgaggaat 1169
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>dbj|AK121767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092B02, full
            insert sequence
          Length = 2838

 Score =  232 bits (117), Expect = 8e-58
 Identities = 264/313 (84%)
 Strand = Plus / Minus

                                                                        
Query: 133  tcgtcgtcgtcagcttcatctacccactcgactcgagaataatccgccgatttcatcaac 192
            ||||| |||||| ||||||| | |||||||||  |||||||  |||| ||||||||||| 
Sbjct: 2589 tcgtcatcgtcaacttcatcaatccactcgacctgagaataggccgctgatttcatcaag 2530

                                                                        
Query: 193  tcggtcagacccgtcaggtcttccagataggtgggttcattgatcacctgcatcacaaaa 252
            || || || || || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 2529 tcagtaaggccggtgaggtcttccagataggttggttcgttgatcacctgcatcacaaaa 2470

                                                                        
Query: 253  tccaatcctctactcctgtattcacgcactaccgcattggaacatgcgatacagctgctc 312
            ||||  ||||| ||   |||||||  ||  || ||||||||||||||| ||||  |||||
Sbjct: 2469 tccatccctctcctatggtattcagacaacactgcattggaacatgcggtacaattgctc 2410

                                                                        
Query: 313  gaggaatagcccatcagggttaataagttgtactgcgatactgattctcgtatctggtgt 372
            |||||||||||||  ||||||| ||||||||||||||| | |||| |||||||||| || 
Sbjct: 2409 gaggaatagcccaatagggttagtaagttgtactgcgagagtgatcctcgtatctgatgc 2350

                                                                        
Query: 373  ggcaatagaccagacggaccctcactgttcgtgtcagcgatatcccctggagcatgtatc 432
            ||||||||||||   |||||||||||| | ||| |||| || || ||||||||||| |||
Sbjct: 2349 ggcaatagaccaagtggaccctcactgcttgtgccagcaatctctcctggagcatggatc 2290

                         
Query: 433  ccatctggatgat 445
            |||||||||||||
Sbjct: 2289 ccatctggatgat 2277



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 286  gcattggaacatgcgatacagctgctcgaggaat 319
            |||||||||||||| |||||| |||| |||||||
Sbjct: 1404 gcattggaacatgcaatacagttgcttgaggaat 1371
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>dbj|AK067422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106N11, full
            insert sequence
          Length = 3462

 Score =  224 bits (113), Expect = 2e-55
 Identities = 263/313 (84%)
 Strand = Plus / Minus

                                                                        
Query: 133  tcgtcgtcgtcagcttcatctacccactcgactcgagaataatccgccgatttcatcaac 192
            ||||| |||||| ||||||| | |||||||||  |||||||  |||| ||||||||||| 
Sbjct: 3207 tcgtcatcgtcaacttcatcaatccactcgacctgagaataggccgctgatttcatcaag 3148

                                                                        
Query: 193  tcggtcagacccgtcaggtcttccagataggtgggttcattgatcacctgcatcacaaaa 252
            || || |  || || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3147 tcagtaacgccggtgaggtcttccagataggttggttcgttgatcacctgcatcacaaaa 3088

                                                                        
Query: 253  tccaatcctctactcctgtattcacgcactaccgcattggaacatgcgatacagctgctc 312
            ||||  ||||| ||   |||||||  ||  || ||||||||||||||| ||||  |||||
Sbjct: 3087 tccatccctctcctatggtattcagacaacactgcattggaacatgcggtacaattgctc 3028

                                                                        
Query: 313  gaggaatagcccatcagggttaataagttgtactgcgatactgattctcgtatctggtgt 372
            |||||||||||||  ||||||| ||||||||||||||| | |||| |||||||||| || 
Sbjct: 3027 gaggaatagcccaatagggttagtaagttgtactgcgagagtgatcctcgtatctgatgc 2968

                                                                        
Query: 373  ggcaatagaccagacggaccctcactgttcgtgtcagcgatatcccctggagcatgtatc 432
            ||||||||||||   |||||||||||| | ||| |||| || || ||||||||||| |||
Sbjct: 2967 ggcaatagaccaagtggaccctcactgcttgtgccagcaatctctcctggagcatggatc 2908

                         
Query: 433  ccatctggatgat 445
            |||||||||||||
Sbjct: 2907 ccatctggatgat 2895



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 286  gcattggaacatgcgatacagctgctcgaggaat 319
            |||||||||||||| |||||| |||| |||||||
Sbjct: 2022 gcattggaacatgcaatacagttgcttgaggaat 1989
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                            
Query: 286      gcattggaacatgcgatacagctgctcgaggaatagcccatcagggttaataagttgtac 345
                ||||||||||||||| ||||  ||||||||||||||||||  ||||||| ||||||||||
Sbjct: 24377260 gcattggaacatgcggtacaattgctcgaggaatagcccaatagggttagtaagttgtac 24377319

                                                                            
Query: 346      tgcgatactgattctcgtatctggtgtggcaatagaccagacggaccctcactgttcgtg 405
                ||||| | |||| |||||||||| || ||||||||||||   |||||||||||| | |||
Sbjct: 24377320 tgcgagagtgatcctcgtatctgatgcggcaatagaccaagtggaccctcactgcttgtg 24377379

                                            
Query: 406      tcagcgatatcccctggagcatgtatcc 433
                 |||| || || ||||||||||| ||||
Sbjct: 24377380 ccagcaatctctcctggagcatggatcc 24377407



 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Plus

                                                                            
Query: 133      tcgtcgtcgtcagcttcatctacccactcgactcgagaataatccgccgatttcatcaac 192
                ||||| |||||| ||||||| | |||||||||  |||||||  |||| ||||||||||| 
Sbjct: 24377003 tcgtcatcgtcaacttcatcaatccactcgacctgagaataggccgctgatttcatcaag 24377062

                                                                            
Query: 193      tcggtcagacccgtcaggtcttccagataggtgggttcattgatcacctgcatcacaaaa 252
                || || || || || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 24377063 tcagtaaggccggtgaggtcttccagataggttggttcgttgatcacctgcatcacaaaa 24377122

                    
Query: 253      tcca 256
                ||||
Sbjct: 24377123 tcca 24377126



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 286      gcattggaacatgcgatacagctgctcgaggaat 319
                |||||||||||||| |||||| |||| |||||||
Sbjct: 24378837 gcattggaacatgcaatacagttgcttgaggaat 24378870
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                          
Query: 286    gcattggaacatgcgatacagctgctcgaggaatagcccatcagggttaataagttgtac 345
              ||||||||||||||| ||||  ||||||||||||||||||  ||||||| ||||||||||
Sbjct: 123164 gcattggaacatgcggtacaattgctcgaggaatagcccaatagggttagtaagttgtac 123223

                                                                          
Query: 346    tgcgatactgattctcgtatctggtgtggcaatagaccagacggaccctcactgttcgtg 405
              ||||| | |||| |||||||||| || ||||||||||||   |||||||||||| | |||
Sbjct: 123224 tgcgagagtgatcctcgtatctgatgcggcaatagaccaagtggaccctcactgcttgtg 123283

                                          
Query: 406    tcagcgatatcccctggagcatgtatcc 433
               |||| || || ||||||||||| ||||
Sbjct: 123284 ccagcaatctctcctggagcatggatcc 123311



 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Plus

                                                                          
Query: 133    tcgtcgtcgtcagcttcatctacccactcgactcgagaataatccgccgatttcatcaac 192
              ||||| |||||| ||||||| | |||||||||  |||||||  |||| ||||||||||| 
Sbjct: 122907 tcgtcatcgtcaacttcatcaatccactcgacctgagaataggccgctgatttcatcaag 122966

                                                                          
Query: 193    tcggtcagacccgtcaggtcttccagataggtgggttcattgatcacctgcatcacaaaa 252
              || || || || || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 122967 tcagtaaggccggtgaggtcttccagataggttggttcgttgatcacctgcatcacaaaa 123026

                  
Query: 253    tcca 256
              ||||
Sbjct: 123027 tcca 123030



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 286    gcattggaacatgcgatacagctgctcgaggaat 319
              |||||||||||||| |||||| |||| |||||||
Sbjct: 124741 gcattggaacatgcaatacagttgcttgaggaat 124774
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>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158496

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 30    tgtgaaacaattttcaaggatg 51
             ||||||||||||||||||||||
Sbjct: 50486 tgtgaaacaattttcaaggatg 50465
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>gb|AC158641.12| Mus musculus 10 BAC RP23-461E22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 186390

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    tgtgaaacaattttcaaggatg 51
             ||||||||||||||||||||||
Sbjct: 20244 tgtgaaacaattttcaaggatg 20265
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>ref|XM_360857.1| Magnaporthe grisea 70-15 hypothetical protein (MG03400.4) partial
            mRNA
          Length = 3870

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  gtcggcaaactcctcgtcgtcgtca 144
            |||| ||||||||||||||||||||
Sbjct: 3417 gtcgccaaactcctcgtcgtcgtca 3393
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 117    catgtcggcaaactcctcgtcgtcg 141
              |||||||||||| ||||||||||||
Sbjct: 320333 catgtcggcaaagtcctcgtcgtcg 320309
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>gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, complete sequence
          Length = 233062

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    tgaatgaagtgatatttacac 92
             |||||||||||||||||||||
Sbjct: 98966 tgaatgaagtgatatttacac 98986
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>gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H14, complete
           sequence
          Length = 118437

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 tcctcgtcgtcgtcagcttcatct 153
           ||||||||||||||| ||||||||
Sbjct: 192 tcctcgtcgtcgtcaccttcatct 215
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>gb|AC008031.6| Trypanosoma brucei chromosome 2 clone RPCI93-25N14, complete sequence
          Length = 151499

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    tcctcgtcgtcgtcagcttcatct 153
              ||||||||||||||| ||||||||
Sbjct: 147347 tcctcgtcgtcgtcaccttcatct 147370
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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    tcctcgtcgtcgtcagcttcatct 153
              ||||||||||||||| ||||||||
Sbjct: 351350 tcctcgtcgtcgtcaccttcatct 351327
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>ref|XM_946425.1| Trypanosoma brucei TREU927 autophagocytosis associated protein
           (Tb927.2.1890) partial mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 130 tcctcgtcgtcgtcagcttcatct 153
           ||||||||||||||| ||||||||
Sbjct: 464 tcctcgtcgtcgtcaccttcatct 441
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>emb|AL445668.10| Human DNA sequence from clone RP11-234O23 on chromosome 13 Contains the
             3' end of a novel gene, complete sequence
          Length = 168068

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    aagtgatatttacactgttttggt 101
             ||||||| ||||||||||||||||
Sbjct: 39566 aagtgatttttacactgttttggt 39589
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>emb|AL353728.8| Human DNA sequence from clone RP11-402B2 on chromosome 9 Contains a
             high-mobility group protein pseudogene, complete sequence
          Length = 165739

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    aaagtgtgtgaaacaattttcaag 47
             ||||| ||||||||||||||||||
Sbjct: 67491 aaagtatgtgaaacaattttcaag 67514
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>gb|AC107300.6| Homo sapiens 3 BAC RP11-516H5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161699

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    aagtgatatttacactgttttggt 101
             ||||||| ||||||||||||||||
Sbjct: 23695 aagtgatttttacactgttttggt 23718
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>gb|AC073840.8| Homo sapiens BAC clone RP11-429O22 from 4, complete sequence
          Length = 187640

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   atctggtgtggcaatagacc 383
             ||||||||||||||||||||
Sbjct: 70760 atctggtgtggcaatagacc 70741
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      gatcacctgcatcacaaaat 253
                ||||||||||||||||||||
Sbjct: 24851539 gatcacctgcatcacaaaat 24851558
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>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208921

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tctctgaatgaagtgatatt 87
             ||||||||||||||||||||
Sbjct: 51041 tctctgaatgaagtgatatt 51022
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      gatcacctgcatcacaaaat 253
                ||||||||||||||||||||
Sbjct: 24779745 gatcacctgcatcacaaaat 24779764
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>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132741

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gatcacctgcatcacaaaat 253
              ||||||||||||||||||||
Sbjct: 113329 gatcacctgcatcacaaaat 113310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,251,679
Number of Sequences: 3902068
Number of extensions: 3251679
Number of successful extensions: 58166
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58001
Number of HSP's gapped (non-prelim): 161
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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