ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLCB4_BOVIN (Q07722) 1-phosphatidylinositol-4,5-bisphosphate pho... 28 5.4
2ACPS_LEPIN (Q8F136) Holo-[acyl-carrier-protein] synthase (EC 2.7... 28 7.1
3ACPS_LEPIC (Q72U18) Holo-[acyl-carrier-protein] synthase (EC 2.7... 28 7.1

>PLCB4_BOVIN (Q07722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-4) (PLC-beta-4) (PCL-C1)
           (Fragment)
          Length = 1023

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 368 EHKSSRHKLPVQIQRITSCYAHAHLLHDKIMEKPAKK 258
           EH + +     Q+ +I + Y    L H+KI+EK  KK
Sbjct: 797 EHSTMQKLHCTQVDKIVAQYDKEKLTHEKILEKAMKK 833



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>ACPS_LEPIN (Q8F136) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 126

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 231 ADRRDPIPHLLGRF 272
           ++R+DPIPHL GRF
Sbjct: 40  SNRKDPIPHLSGRF 53



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>ACPS_LEPIC (Q72U18) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 126

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 231 ADRRDPIPHLLGRF 272
           ++R+DPIPHL GRF
Sbjct: 40  SNRKDPIPHLSGRF 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,456,723
Number of Sequences: 219361
Number of extensions: 563655
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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