ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2022_MYCBO (P63350) Hypothetical transport protein Mb2022c 28 4.0
2Y1999_MYCTU (P63349) Hypothetical transport protein Rv1999c/MT2055 28 4.0
3MYADM_HUMAN (Q96S97) Myeloid-associated differentiation marker (... 28 4.0
4MTH11_DROME (P83118) Probable G-protein coupled receptor Mth-lik... 28 5.3
5SF3B1_SCHPO (Q10178) U2 snRNP component prp10 28 6.9
6ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance recept... 28 6.9
7MYADM_PONPY (Q5R6H1) Myeloid-associated differentiation marker 27 9.0

>Y2022_MYCBO (P63350) Hypothetical transport protein Mb2022c|
          Length = 440

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 387 LVCLVGTSTSRLRLANDRYAAYWLMAIH 304
           L  ++G S + L +A DR+   WL A+H
Sbjct: 290 LALILGVSRTTLAMARDRHLPRWLAAVH 317



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>Y1999_MYCTU (P63349) Hypothetical transport protein Rv1999c/MT2055|
          Length = 440

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 387 LVCLVGTSTSRLRLANDRYAAYWLMAIH 304
           L  ++G S + L +A DR+   WL A+H
Sbjct: 290 LALILGVSRTTLAMARDRHLPRWLAAVH 317



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>MYADM_HUMAN (Q96S97) Myeloid-associated differentiation marker (SB135)|
          Length = 322

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 138 RTMATSCCNK*VYSVCCWNMYLAISVL--VNLIGF 40
           R+   SC     Y VC W+  LA+++L  +NL+ +
Sbjct: 273 RSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLAY 307



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>MTH11_DROME (P83118) Probable G-protein coupled receptor Mth-like 11 precursor|
           (Protein methuselah-like 11)
          Length = 510

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 138 RTMATSCCNK*VYSVCCWNMYLAISVLVNLIGFYGVLSL 22
           R++   CCN  +Y +C     LAI+ L+N+I  +G+  L
Sbjct: 254 RSLHGKCCN--LYFIC-----LAITFLLNVISLFGIFEL 285



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>SF3B1_SCHPO (Q10178) U2 snRNP component prp10|
          Length = 1188

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 217 QHKSTNGGERI*STREQRGLNYSTHLIKLMN 309
           ++ STNG   I  T++   L Y+ HL K  N
Sbjct: 27  KNSSTNGSVNIEGTQDSNDLQYNAHLFKSSN 57



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>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor|
           (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide
           C-type receptor) (EF-2)
          Length = 536

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -1

Query: 133 YGDFXXXXXXXXXXXLEHVFGYFSSSQLNWLLRSIISYKFGPSK 2
           YGDF            + V G +   +  + +RS + Y +GP K
Sbjct: 408 YGDFSVVAMTDTEAGTQEVIGDYFGKEGRFQMRSNVKYPWGPLK 451



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>MYADM_PONPY (Q5R6H1) Myeloid-associated differentiation marker|
          Length = 322

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 138 RTMATSCCNK*VYSVCCWNMYLAISVL--VNLIGF 40
           R+   SC     Y VC W+  LA+++L  +NL+ +
Sbjct: 273 RSRDVSCSRSHAYYVCGWDRRLAVAILTAINLLAY 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,321,382
Number of Sequences: 219361
Number of extensions: 922301
Number of successful extensions: 1501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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