>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog|
           B)
          Length = 269

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 41  TTERKEDTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSH 208
           T+    D+  K +R+V      T  LE    + +  R+   PE ++L      TPTQ   
Sbjct: 115 TSSNGSDSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKI 171

Query: 209 LFLHHRFLSKKA 244
            F +HR+  K+A
Sbjct: 172 WFQNHRYKMKRA 183

>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor|
          Length = 416

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 71  KAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNPTPTQTSHLFL 217
           KA+R++  E G TPTLE   ++              L+ TPTQ   + L
Sbjct: 267 KAQRKIAQEKGRTPTLEDLAIE--------------LDMTPTQVREVLL 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,001,946
Number of Sequences: 219361
Number of extensions: 665868
Number of successful extensions: 1838
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)