ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06f02 |
|---|---|
| Clone Library Name | barley_pub |
>CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 34.3 bits (77), Expect = 0.073 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP +G AST KA Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKA 196
>GR93A_DROME (Q9VD76) Putative gustatory receptor 93a| Length = 419 Score = 33.1 bits (74), Expect = 0.16 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = -1 Query: 366 RTRFWMRLVLMWLLSC---LLHLKAVLEPVPRKLRTTKHGM--RLQRKTWRLNLMPLKSM 202 R W RL+L+WL C LL L + L+ +L+ TK G R WR ++ + + Sbjct: 12 RAESWSRLLLLWLYRCARGLLVLSSSLDRDKLQLKATKQGSRNRFLHILWRCIVVMIYAG 71 Query: 201 IW 196 +W Sbjct: 72 LW 73
>DID4_YEAST (P36108) DOA4-independent degradation protein 4 (Vacuolar protein| sorting-associated protein VPS2) Length = 151 Score = 32.7 bits (73), Expect = 0.21 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRI 296 + N+VLDEIGVD+ SQL S P+ + Sbjct: 86 IVNKVLDEIGVDLNSQLQSTPQNLV 110
>TRA1_YEAST (P38811) Transcription-associated protein 1 (p400 kDa component of| SAGA) Length = 3744 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 3 HQTENSGSIKSSLTCTKLVSWLQY*PNRIWKQGTSKQIYIYIRHY 137 ++ SGS+KS L K WL+ N+IWK + Y + H+ Sbjct: 1813 YEVATSGSLKSYLVEDKKPKWLELLHNKIWKNSNAILAYDVLDHH 1857
>CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A| (Chromatin-modifying protein 2b-A) (CHMP2b-A) Length = 214 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP KG AS K+ Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKS 196
>CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGASTKKAENN 266 + NQVLDEIG++++ +++ AP G + A + Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKS 196
>CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B| (Chromatin-modifying protein 2b-B) (CHMP2b-B) Length = 214 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGASTKKAENNQ 263 + NQVLDEIG++++ +++ AP G + A ++ Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSK 197
>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 32.0 bits (71), Expect = 0.36 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP + AST KA Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 32.0 bits (71), Expect = 0.36 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP + AST KA Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2) Length = 213 Score = 32.0 bits (71), Expect = 0.36 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP + AST KA Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 30.8 bits (68), Expect = 0.81 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKA 275 + NQVLDEIG++++ +++ AP + AST K+ Sbjct: 162 IVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKS 196
>CHM2B_BRARE (Q6NXD2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 3/36 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAP---KGRIGASTKKAE 272 + NQVLDEIG++++ +++ AP + A+T KA+ Sbjct: 162 IVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKAD 197
>TOP2_CAEEL (Q23670) Probable DNA topoisomerase 2 (EC 5.99.1.3) (DNA| topoisomerase II) Length = 1520 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -3 Query: 352 DEIGVDVASQLSSAPKGRIGASTKKAE--------NNQARNAAPAKNVAPEPNAAEVDDL 197 D+ GV+ + S PK R G KAE A+ APAK AP+ +E DL Sbjct: 1359 DDDGVE-REDVVSKPKPRTGKGAAKAEVIDLSDDDEVPAKKPAPAKKAAPKKKKSEFSDL 1417
>MPDZ_HUMAN (O75970) Multiple PDZ domain protein (Multi PDZ domain protein 1)| (Multi-PDZ-domain protein 1) Length = 2042 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 346 IGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAKNV 233 +G+ ++S +S P+ R+ AST+K E ++ + KNV Sbjct: 347 LGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNV 384
>CHM2A_BRARE (Q7ZW25) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) Length = 220 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAKNVAPEPNAAEVD-DLE 194 + +QVLDE+G+ ++ +LS+ P + + A K P+P A+ D DLE Sbjct: 163 VVSQVLDELGLTLSDELSNLP-----------ATGGSLSVAAGKKAEPQPTLADADADLE 211
>FBX16_MOUSE (Q9QZM9) F-box only protein 16| Length = 334 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 244 LEPHSVLGCSQLSWYW 291 L+P S+ C+Q+SWYW Sbjct: 104 LDPRSLCRCAQVSWYW 119
>ST65G_HUMAN (O94864) STAGA complex 65 gamma subunit (STAF65gamma)| (SPTF-associated factor 65 gamma) (Suppressor of Ty 7-like) (Adenocarcinoma antigen ART1) Length = 414 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAKNVAPEPNAAEVDDL 197 +T V +E+ D+AS S P G +GA +++ +N A+P + A E NA+ + +L Sbjct: 283 ITFPVSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSA-EVNASPLWNL 339
>ATP8_CAVPO (Q9TEG7) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)| (A6L) Length = 67 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = -1 Query: 363 TRFWMRLVLMWLLSC--LLHLKA-----VLEPVPRKLRTTKHGMRLQRKTWRLNLMPL 211 T W ++L ++S LL LK L+P L+TTKH + + K W +PL Sbjct: 6 TSTWFTVILSMIISLFMLLQLKISSHSFYLDPKTMSLKTTKHNLPWENK-WTKTYLPL 62
>YDS1_SCHPO (O14177) Hypothetical protein C4F8.01 in chromosome I| Length = 210 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGA--STKKAENNQAR 257 L N+VLDEIGVD++ L A +IG K +N QAR Sbjct: 165 LVNKVLDEIGVDLSQGLPDAAT-QIGTVPELKTEDNLQAR 203
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -3 Query: 349 EIGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAKNVAPEPNAAEVDDLE 194 E V +A+ ++AP A+T A+ A P K E +DDLE Sbjct: 875 EKAVTIATPATAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLDDLE 926
>OAPA_HAEIN (P44415) Opacity-associated protein oapA| Length = 431 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 352 DEIGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAKNVAPEPN 218 +++ V+ A+Q APK A+ A+N NA +NV P+ Sbjct: 200 NQMAVEQANQSEFAPKAEEAANNTTAQNPLVENAPMQQNVVQSPS 244
>RIF1_YEAST (P29539) Protein RIF1 (RAP1-interacting factor 1)| Length = 1916 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -3 Query: 334 VASQLSSAPKGRIGASTKKAENNQARNAAPAKNVAPEPNAAEV 206 + S LS PK R AS+ EN Q +A KN+ PE + + Sbjct: 52 IQSDLSPTPKRRKLASSSDCENKQFDLSAINKNLYPEDTGSRL 94
>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKG--RIGASTKKAENNQ-ARNAAPAKN 236 L Q+ +E G++V QLS P+G +G S+ +++ +Q +R A +N Sbjct: 149 LIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALRN 196
>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar protein sorting 46-1) (Vps46-1) (hVps46-1) Length = 196 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKG--RIGASTKKAENNQ-ARNAAPAKN 236 L Q+ +E G++V QLS P+G +G S+ +++ +Q +R A +N Sbjct: 149 LIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALRN 196
>H2B3_VOLCA (P16867) Histone H2B-III| Length = 157 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 331 ASQLSSAPKGRIGASTKKAENNQARNA-APAKNVAPEPNAAEVD 203 ASQ + AP+ + A K + + + APAK VA EP+A D Sbjct: 10 ASQAAEAPEVKAEAKPKAVKAPKKKEKKAPAKKVAKEPSAGGED 53
>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%) Frame = -3 Query: 361 QVLDEIGVDVASQLSSAPKG--RIGASTKKAENNQ-ARNAAPAKN 236 Q+ +E G++V QLS P+G +G S+ +++ +Q +R A +N Sbjct: 152 QIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALRN 196
>H13_HUMAN (P16402) Histone H1.3 (Histone H1c)| Length = 220 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -3 Query: 334 VASQLSSAPKGRIGASTKKAENNQARNAA--PAKNVAPEPNAAE 209 V ++A ++ S KK + Q + AA PAK AP+P AA+ Sbjct: 158 VKKPATAAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAK 201
>TLR1_DROME (P30974) Tachykinin-like peptides receptor 86C (NKD)| Length = 504 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -1 Query: 381 KQKSSRTRFWMRLVLMWLLSCLLHLKAVL 295 K+++SR + + LVL+W LSC+L +L Sbjct: 190 KRRTSRRKVRIILVLIWALSCVLSAPCLL 218
>YT66_CAEEL (Q11082) Probable G-protein coupled receptor B0563.6| Length = 434 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 254 IPCLVVLSFLGTGSNTAFRCRRQLRSHINTNLIQNLVRELFCFLFSLI 397 +PC+ + +G +N R+LR+ L V +L C LF L+ Sbjct: 31 LPCICAIGIVGNITNLMVLASRRLRAVSYMYLRALAVADLLCMLFVLV 78
>ST65G_MOUSE (Q9CZV5) STAGA complex 65 gamma subunit (STAF65gamma)| (SPTF-associated factor 65 gamma) (Suppressor of Ty 7-like) Length = 412 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKGRIGASTKKAENNQARNAAPAK-----NVAPEPNAAEV 206 +T V +E+ D+AS S P G +GA +++ +N A+P N +P N A V Sbjct: 281 ITFPVSEELEADLASGDQSLPIGVLGAQSERFPSNLEVEASPQAPSAEVNASPLWNLAHV 340
>ODP2_AZOVI (P10802) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 637 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = -3 Query: 361 QVLDEIGVDVASQLSSAPKGRI---------GASTKKAENNQARNAAPAKNVAPEP 221 Q+ E GV++A+ S+ P+GRI A +KA+ A AA + P P Sbjct: 344 QLAREFGVELAAINSTGPRGRILKEDVQAYVKAMMQKAKEAPAAGAASGAGIPPIP 399
>LUXC2_PHOLE (P29236) Acyl-CoA reductase (EC 1.2.1.50)| Length = 478 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 24 SIKSSLTCTKLVSWLQY*PNRIWKQGTSKQIYIYIRHYINFLXXXXXQMRRRDAN 188 +I++ LT ++V++L Y + WK T + YIR I FL +M + +AN Sbjct: 48 NIENKLTINQIVNFL-YTVGQKWKSETYSRRLTYIRDLIKFL-GYSQEMAKLEAN 100
>ZFP59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger protein| Mfg-2) Length = 634 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 299 TAFRCRRQLRSHINTNLIQNL 361 +AFRCR QL H+ + ++N+ Sbjct: 584 SAFRCRSQLNKHLRIHTVRNI 604
>CHM2A_MOUSE (Q9DB34) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) (Vacuolar protein sorting 2) (mVps2) Length = 222 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKG----RIGASTKKAE 272 + +QVLDE+G+ + +LS+ P + A KKAE Sbjct: 163 VVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAE 199
>CHM2A_HUMAN (O43633) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) (Vacuolar protein sorting 2-1) (Vps2-1) (hVps2-1) (Putative breast adenocarcinoma marker BC-2) Length = 222 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Frame = -3 Query: 370 LTNQVLDEIGVDVASQLSSAPKG----RIGASTKKAE 272 + +QVLDE+G+ + +LS+ P + A KKAE Sbjct: 163 VVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAE 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,420,969 Number of Sequences: 219361 Number of extensions: 876146 Number of successful extensions: 2407 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2405 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
