ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X62388.1|HV1433PH H.vulgare mRNA for 14-3-3 protein homolog... 648 0.0
2ref|XM_469508.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
3gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.005
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
6dbj|D16140.1|RICS94A Oryza sativa S94 mRNA for brain specific pr... 50 0.005
7dbj|AK103065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
8gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome... 48 0.018
9dbj|AK154390.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.071
10emb|AL611924.14| Mouse DNA sequence from clone RP23-106K5 on chr... 46 0.071
11gb|AC101748.7| Mus musculus chromosome 5, clone RP24-133H21, com... 44 0.28
12gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, comple... 44 0.28
13gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 44 0.28
14dbj|AK062077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
15emb|AL603786.3| Zebrafish DNA sequence from clone BUSM1-57F23, c... 44 0.28
16emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in... 44 0.28
17gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete... 42 1.1
18gb|BT013570.1| Lycopersicon esculentum clone 132308R, mRNA sequence 42 1.1
19emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chrom... 42 1.1
20dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox ... 42 1.1
21gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome... 42 1.1
22dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15,... 42 1.1
23gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53... 42 1.1
24dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.1
25emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chrom... 42 1.1
26emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-1... 42 1.1
27dbj|AP000961.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 1.1
28gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, com... 40 4.4
29gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complet... 40 4.4
30ref|XM_471692.1| Oryza sativa (japonica cultivar-group), predic... 40 4.4
31gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence 40 4.4
32gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 40 4.4
33emb|BX537295.7| Zebrafish DNA sequence from clone DKEY-21O10 in ... 40 4.4
34gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosom... 40 4.4
35gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosom... 40 4.4
36gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, compl... 40 4.4
37gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
38emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4,... 40 4.4
39gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosom... 40 4.4
40emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in... 40 4.4
41gb|AC107025.3| Homo sapiens 3 BAC RP11-474M18 (Roswell Park Canc... 40 4.4
42gb|BC042487.1| Homo sapiens cDNA clone IMAGE:4821609 40 4.4
43gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, comp... 40 4.4
44gb|AC087886.11| Homo sapiens 12 BAC RP11-578A9 (Roswell Park Can... 40 4.4
45gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map... 40 4.4
46gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome ... 40 4.4
47gb|AC024569.5| Homo sapiens chromosome 5 clone CTD-2188H20, comp... 40 4.4
48gb|AC152416.2| Mus musculus BAC clone RP23-352L15 from chromosom... 40 4.4
49gb|AC020977.6| Homo sapiens chromosome 5 clone RP11-92M7, comple... 40 4.4
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
52dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
53gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, compl... 40 4.4
54gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromos... 40 4.4
55gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, comple... 40 4.4
56gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, comple... 40 4.4
57gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence 40 4.4
58dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
59emb|BX323798.6| Zebrafish DNA sequence from clone CH211-225G5, c... 40 4.4
60emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chr... 40 4.4
61dbj|AK120531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
62emb|AL954149.19| Zebrafish DNA sequence from clone CH211-146G19 ... 40 4.4
63gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
64emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.4
65gb|CP000218.1| Drosophila melanogaster genomic scaffold 21100002... 40 4.4
66gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 4.4
67dbj|AP000079.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 4.4 
>emb|X62388.1|HV1433PH H.vulgare  mRNA for 14-3-3 protein homologue (14-3-3a)
          Length = 1361

 Score =  648 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gatgttgaacatgtggatcgatataataataagaaaatacatttcataattaagctaagg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 gatgttgaacatgtggatcgatataataataagaaaatacatttcataattaagctaagg 1301

                                                                        
Query: 61   gaagaatcctagaacttcaattattttgagagggaaagtagacaagaaaatctcagttgt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 gaagaatcctagaacttcaattattttgagagggaaagtagacaagaaaatctcagttgt 1241

                                                                        
Query: 121  tgcctcataagaaaggcacaagctttgggggcgccttacgcgaagtatgatcaatcatca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tgcctcataagaaaggcacaagctttgggggcgccttacgcgaagtatgatcaatcatca 1181

                                                                        
Query: 181  acaagccatgaaaattgctaatacagcaatactaataatgggctgcaatacaggaaatag 240
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1180 acaagccatgaaaattgctaatacagcaatactaataatgtgctgcaatacaggaaatag 1121

                                                                        
Query: 241  tttgaaatctgctaatgaactaagaagcgacgatgtccacatgaccgtcctcatgactgt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 tttgaaatctgctaatgaactaagaagcgacgatgtccacatgaccgtcctcatgactgt 1061

                                           
Query: 301  agtccactaggtacttcagctcgacacgctt 331
            |||||||||||||||||||||||||||||||
Sbjct: 1060 agtccactaggtacttcagctcgacacgctt 1030
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>ref|XM_469508.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1362

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 197  gctaatacagcaatactaataatgggctgc-aatacaggaa 236
            ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 1242 gctaatacagcgatactaataatgtgctgcaaatacaggaa 1202



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  gtccactaggtacttcagctcgacac 327
            ||||||| ||||||||||||||||||
Sbjct: 1136 gtccactgggtacttcagctcgacac 1111
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>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01
             map R1538, complete sequence
          Length = 142712

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                      
Query: 197   gctaatacagcaatactaataatgggctgc-aatacaggaa 236
             ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 40195 gctaatacagcgatactaataatgtgctgcaaatacaggaa 40235



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 302   gtccactaggtacttcagctcgacac 327
             ||||||| ||||||||||||||||||
Sbjct: 40301 gtccactgggtacttcagctcgacac 40326
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                         
Query: 197      gctaatacagcaatactaataatgggctgc-aatacaggaa 236
                ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 28372847 gctaatacagcgatactaataatgtgctgcaaatacaggaa 28372807



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 124      ctcataagaaaggcacaagctttg 147
                ||||||||||||||||||||||||
Sbjct: 29468758 ctcataagaaaggcacaagctttg 29468735



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 302      gtccactaggtacttcagctcgacac 327
                ||||||| ||||||||||||||||||
Sbjct: 28372741 gtccactgggtacttcagctcgacac 28372716
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                         
Query: 197      gctaatacagcaatactaataatgggctgc-aatacaggaa 236
                ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 28464171 gctaatacagcgatactaataatgtgctgcaaatacaggaa 28464131



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 124      ctcataagaaaggcacaagctttg 147
                ||||||||||||||||||||||||
Sbjct: 29560180 ctcataagaaaggcacaagctttg 29560157



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 302      gtccactaggtacttcagctcgacac 327
                ||||||| ||||||||||||||||||
Sbjct: 28464065 gtccactgggtacttcagctcgacac 28464040
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>dbj|D16140.1|RICS94A Oryza sativa S94 mRNA for brain specific protein, complete cds
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 197  gctaatacagcaatactaataatgggctgc-aatacaggaa 236
            ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 1279 gctaatacagcgatactaataatgtgctgcaaatacaggaa 1239



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  gtccactaggtacttcagctcgacac 327
            ||||||| ||||||||||||||||||
Sbjct: 1173 gtccactgggtacttcagctcgacac 1148
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>dbj|AK103065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117N24, full
            insert sequence
          Length = 1382

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 197  gctaatacagcaatactaataatgggctgc-aatacaggaa 236
            ||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 1244 gctaatacagcgatactaataatgtgctgcaaatacaggaa 1204



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  gtccactaggtacttcagctcgacac 327
            ||||||| ||||||||||||||||||
Sbjct: 1138 gtccactgggtacttcagctcgacac 1113
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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 124   ctcataagaaaggcacaagctttg 147
             ||||||||||||||||||||||||
Sbjct: 18543 ctcataagaaaggcacaagctttg 18566
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>dbj|AK154390.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630026G22
           product:Warning: possibly chimeric clone, full insert
           sequence
          Length = 5435

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 52  aagctaagggaagaatcctagaa 74
           |||||||||||||||||||||||
Sbjct: 972 aagctaagggaagaatcctagaa 994
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>emb|AL611924.14| Mouse DNA sequence from clone RP23-106K5 on chromosome 4, complete
             sequence
          Length = 164958

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 52    aagctaagggaagaatcctagaa 74
             |||||||||||||||||||||||
Sbjct: 18090 aagctaagggaagaatcctagaa 18112
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>gb|AC101748.7| Mus musculus chromosome 5, clone RP24-133H21, complete sequence
          Length = 168366

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 23     ataataataagaaaatacattt 44
              ||||||||||||||||||||||
Sbjct: 109048 ataataataagaaaatacattt 109069
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>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence
          Length = 170033

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 81     ttattttgagagggaaagtaga 102
              ||||||||||||||||||||||
Sbjct: 150526 ttattttgagagggaaagtaga 150505
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 270     acgatgtccacatgaccgtcct 291
               ||||||||||||||||||||||
Sbjct: 2576609 acgatgtccacatgaccgtcct 2576630
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>dbj|AK062077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F06, full
            insert sequence
          Length = 1174

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  gtccactaggtacttcagctcgacac 327
            ||||||| ||||||||||||||||||
Sbjct: 1141 gtccactgggtacttcagctcgacac 1116
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>emb|AL603786.3| Zebrafish DNA sequence from clone BUSM1-57F23, complete sequence
          Length = 94712

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 21    atataataataagaaaatacatttca 46
             |||||||||||||| |||||||||||
Sbjct: 30727 atataataataagataatacatttca 30752
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>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10,
             complete sequence
          Length = 188280

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 21    atataataataagaaaatacatttca 46
             |||||||||||||| |||||||||||
Sbjct: 75018 atataataataagataatacatttca 74993
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>gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete sequence
          Length = 145213

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    ataataataagaaaatacatt 43
             |||||||||||||||||||||
Sbjct: 84665 ataataataagaaaatacatt 84645
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>gb|BT013570.1| Lycopersicon esculentum clone 132308R, mRNA sequence
          Length = 5039

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 92   gggaaagtagacaagaaaatc 112
            |||||||||||||||||||||
Sbjct: 4482 gggaaagtagacaagaaaatc 4502



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   gggaaagtagacaagaaaat 111
            ||||||||||||||||||||
Sbjct: 4401 gggaaagtagacaagaaaat 4420
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>emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, the gene for ileal
              fatty acid binding protein 6 (gastrotropin) (Fabp6), two
              novel genes, the gene for a novel protein (1810033K05Rik),
              a mitochondrial ribosomal protein 63 (Mrp63) pseudogene,
              the gene for step II splicing factor SLU7 (Slu7-pending),
              the Pttg1 gene for pituitary tumor-transforming 1 and a CpG
              island, complete sequence
          Length = 232609

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 91     agggaaagtagacaagaaaat 111
              |||||||||||||||||||||
Sbjct: 220815 agggaaagtagacaagaaaat 220835
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>dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox protein, complete cds
          Length = 10847

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 68   cctagaacttcaattattttg 88
            |||||||||||||||||||||
Sbjct: 8585 cctagaacttcaattattttg 8565
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>gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence
          Length = 180263

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 243    tgaaatctgctaatgaactaa 263
              |||||||||||||||||||||
Sbjct: 113661 tgaaatctgctaatgaactaa 113641
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>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete
              sequences
          Length = 198333

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 213    taataatgggctgcaatacaggaaa 237
              |||||||||||||| ||||||||||
Sbjct: 128039 taataatgggctgctatacaggaaa 128015
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>gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53 of 83 of the complete
              sequence
          Length = 263306

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     ataataataagaaaatacatt 43
              |||||||||||||||||||||
Sbjct: 197979 ataataataagaaaatacatt 197999
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>dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, section 32/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 213   taataatgggctgcaatacaggaaa 237
             |||||||||||||| ||||||||||
Sbjct: 72165 taataatgggctgctatacaggaaa 72141
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>emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chromosome 4, complete
             sequence
          Length = 89437

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tataataataagaaaatacat 42
             |||||||||||||||||||||
Sbjct: 45354 tataataataagaaaatacat 45374
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>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162209

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     ataagaaaatacatttcataa 49
              |||||||||||||||||||||
Sbjct: 114266 ataagaaaatacatttcataa 114286
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>dbj|AP000961.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B811H6,
            LL56-APP region, complete sequence
          Length = 165860

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 213  taataatgggctgcaatacaggaaa 237
            |||||||||||||| ||||||||||
Sbjct: 5798 taataatgggctgctatacaggaaa 5774
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>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence
          Length = 176450

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    tgagagggaaagtagacaag 106
             ||||||||||||||||||||
Sbjct: 55775 tgagagggaaagtagacaag 55756
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>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence
          Length = 159541

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 ggaaatagtttgaaatctgc 252
           ||||||||||||||||||||
Sbjct: 362 ggaaatagtttgaaatctgc 381
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>ref|XM_471692.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 128 taagaaaggcacaagctttggggg 151
           ||||||||||| ||||||||||||
Sbjct: 374 taagaaaggcaaaagctttggggg 397
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>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence
          Length = 78195

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aatcctagaacttcaattattttg 88
             ||||||| ||||||||||||||||
Sbjct: 36510 aatcctaaaacttcaattattttg 36533
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>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    aatcctagaacttcaattattttg 88
             ||||||||||||| ||||||||||
Sbjct: 16833 aatcctagaacttaaattattttg 16810
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>emb|BX537295.7| Zebrafish DNA sequence from clone DKEY-21O10 in linkage group 1,
             complete sequence
          Length = 165366

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ataataataagaaaatacat 42
             ||||||||||||||||||||
Sbjct: 35826 ataataataagaaaatacat 35845
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>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aataataagaaaatacattt 44
              ||||||||||||||||||||
Sbjct: 160367 aataataagaaaatacattt 160386
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>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete sequence
          Length = 177469

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aataataagaaaatacattt 44
              ||||||||||||||||||||
Sbjct: 165101 aataataagaaaatacattt 165082
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>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence
          Length = 210514

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    aagaaaatacatttcataattaag 54
             |||||||||||||||||| |||||
Sbjct: 60980 aagaaaatacatttcatagttaag 61003
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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    atgggctgcaatacaggaaa 237
              ||||||||||||||||||||
Sbjct: 111441 atgggctgcaatacaggaaa 111422
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>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03,
              complete sequence
          Length = 118791

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 128    taagaaaggcacaagctttggggg 151
              ||||||||||| ||||||||||||
Sbjct: 110115 taagaaaggcaaaagctttggggg 110138
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>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete sequence
          Length = 170988

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     aagaaaatacatttcataattaag 54
              |||||||||||||||||| |||||
Sbjct: 115424 aagaaaatacatttcatagttaag 115447
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>emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in linkage group 6,
             complete sequence
          Length = 171498

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    cttcaattattttgagagggaaag 98
             |||||||||||||||||| |||||
Sbjct: 87878 cttcaattattttgagagagaaag 87901
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>gb|AC107025.3| Homo sapiens 3 BAC RP11-474M18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178033

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaatacatttcataattaa 53
             ||||||||||||||||||||
Sbjct: 32986 aaaatacatttcataattaa 33005
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>gb|BC042487.1| Homo sapiens cDNA clone IMAGE:4821609
          Length = 2772

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaaatacatttcataattaa 53
            ||||||||||||||||||||
Sbjct: 1905 aaaatacatttcataattaa 1924
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>gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, complete sequence
          Length = 67437

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   aaaatctcagttgttgcctc 126
             ||||||||||||||||||||
Sbjct: 41730 aaaatctcagttgttgcctc 41749
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>gb|AC087886.11| Homo sapiens 12 BAC RP11-578A9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191923

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    ataatgggctgcaatacaggaaat 238
              ||||||||| ||||||||||||||
Sbjct: 151375 ataatgggcagcaatacaggaaat 151352
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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
             sequence
          Length = 131743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aataagaaaatacatttcat 47
             ||||||||||||||||||||
Sbjct: 52636 aataagaaaatacatttcat 52617
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>gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome 5, complete sequence
          Length = 201330

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ggaagaatcctagaacttca 79
              ||||||||||||||||||||
Sbjct: 108739 ggaagaatcctagaacttca 108720
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>gb|AC024569.5| Homo sapiens chromosome 5 clone CTD-2188H20, complete sequence
          Length = 193547

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ataataataagaaaatacatttca 46
             |||||||||| |||||||||||||
Sbjct: 70429 ataataataaaaaaatacatttca 70406
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>gb|AC152416.2| Mus musculus BAC clone RP23-352L15 from chromosome 5, complete sequence
          Length = 204014

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ggaagaatcctagaacttca 79
             ||||||||||||||||||||
Sbjct: 23552 ggaagaatcctagaacttca 23533
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>gb|AC020977.6| Homo sapiens chromosome 5 clone RP11-92M7, complete sequence
          Length = 156105

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ataataataagaaaatacatttca 46
             |||||||||| |||||||||||||
Sbjct: 52925 ataataataaaaaaatacatttca 52902
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 128      taagaaaggcacaagctttggggg 151
                ||||||||||| ||||||||||||
Sbjct: 13473344 taagaaaggcaaaagctttggggg 13473367
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      atgggctgcaatacaggaaa 237
                ||||||||||||||||||||
Sbjct: 24711047 atgggctgcaatacaggaaa 24711066
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 124     ctcataagaaaggcacaagctttg 147
               |||||||||||||||||| |||||
Sbjct: 9050154 ctcataagaaaggcacaaactttg 9050131
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>gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, complete sequence
          Length = 185272

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ggaaagtagacaagaaaatc 112
             ||||||||||||||||||||
Sbjct: 88564 ggaaagtagacaagaaaatc 88583
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>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete sequence
          Length = 222089

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     ggaaagtagacaagaaaatc 112
              ||||||||||||||||||||
Sbjct: 169815 ggaaagtagacaagaaaatc 169834
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>gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, complete sequence
          Length = 151037

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaatacatttcataattaa 53
             ||||||||||||||||||||
Sbjct: 92004 aaaatacatttcataattaa 92023
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>gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, complete sequence
          Length = 165020

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ggaagaatcctagaacttca 79
             ||||||||||||||||||||
Sbjct: 93383 ggaagaatcctagaacttca 93364
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>gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence
          Length = 171209

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   aaaattgctaatacagcaat 210
             ||||||||||||||||||||
Sbjct: 28793 aaaattgctaatacagcaat 28812
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0499C11
          Length = 151369

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   ctcataagaaaggcacaagctttg 147
             |||||||||||||||||| |||||
Sbjct: 79161 ctcataagaaaggcacaaactttg 79138
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>emb|BX323798.6| Zebrafish DNA sequence from clone CH211-225G5, complete sequence
          Length = 81343

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaatacatttcataattaa 53
             ||||||||||||||||||||
Sbjct: 27631 aaaatacatttcataattaa 27612
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>emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chromosome 4, complete
             sequence
          Length = 234393

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    tgagagggaaagtagacaag 106
             ||||||||||||||||||||
Sbjct: 79099 tgagagggaaagtagacaag 79080
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>dbj|AK120531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127H23, full
            insert sequence
          Length = 6225

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 124  ctcataagaaaggcacaagctttg 147
            |||||||||||||||||| |||||
Sbjct: 1229 ctcataagaaaggcacaaactttg 1252
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>emb|AL954149.19| Zebrafish DNA sequence from clone CH211-146G19 in linkage group 2,
              complete sequence
          Length = 163971

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 22     tataataataagaaaatacatttcataa 49
              |||||||| |||||||||||||| ||||
Sbjct: 103594 tataataaaaagaaaatacatttaataa 103621
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      atgggctgcaatacaggaaa 237
                ||||||||||||||||||||
Sbjct: 25022717 atgggctgcaatacaggaaa 25022736
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>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10,
            complete sequence
          Length = 133238

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 128  taagaaaggcacaagctttggggg 151
            ||||||||||| ||||||||||||
Sbjct: 1138 taagaaaggcaaaagctttggggg 1161
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>gb|CP000218.1| Drosophila melanogaster genomic scaffold 211000022280780
          Length = 166742

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     gatataataataagaaaata 39
              ||||||||||||||||||||
Sbjct: 130817 gatataataataagaaaata 130798
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 191     aaaattgctaatacagcaat 210
               ||||||||||||||||||||
Sbjct: 1661437 aaaattgctaatacagcaat 1661456
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>dbj|AP000079.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 15/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tataataataagaaaataca 41
             ||||||||||||||||||||
Sbjct: 39808 tataataataagaaaataca 39827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,767,706
Number of Sequences: 3902068
Number of extensions: 3767706
Number of successful extensions: 86604
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86309
Number of HSP's gapped (non-prelim): 295
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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