ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06e07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 73.2 bits (178), Expect = 2e-13 Identities = 34/34 (100%), Positives = 34/34 (100%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI Sbjct: 829 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 64.3 bits (155), Expect = 8e-11 Identities = 30/34 (88%), Positives = 32/34 (94%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 PA+FPYMLLYPNTSD GAAAG+TAKGIPNSISI Sbjct: 833 PAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 60.1 bits (144), Expect = 1e-09 Identities = 26/34 (76%), Positives = 31/34 (91%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 PA FPY L++PNTSD+KGAA G+TA+GIPNSISI Sbjct: 830 PANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 58.2 bits (139), Expect = 6e-09 Identities = 27/34 (79%), Positives = 29/34 (85%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P FPY LLYPNTSD KG AAGL+A+GIPNSISI Sbjct: 837 PTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 50.1 bits (118), Expect = 2e-06 Identities = 26/35 (74%), Positives = 26/35 (74%), Gaps = 1/35 (2%) Frame = -2 Query: 247 PAKFPYMLLYPNTSD-HKGAAAGLTAKGIPNSISI 146 P K PYMLLYPNTSD K GLTA GIPNSISI Sbjct: 843 PVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/34 (58%), Positives = 24/34 (70%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 PAK PY LLYP++ + GLT +GIPNSISI Sbjct: 826 PAKMPYTLLYPSSEE------GLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 39.3 bits (90), Expect = 0.003 Identities = 19/34 (55%), Positives = 23/34 (67%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P K PY LLYP++ + GLT +GIPNSISI Sbjct: 839 PVKMPYTLLYPSSEE------GLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 37.0 bits (84), Expect = 0.013 Identities = 18/34 (52%), Positives = 23/34 (67%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LLYP++ + GLT +GIPNSISI Sbjct: 834 PVEMPYTLLYPSSKE------GLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 37.0 bits (84), Expect = 0.013 Identities = 18/34 (52%), Positives = 23/34 (67%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LLYP++ + GLT +GIPNSISI Sbjct: 812 PVQLPYTLLYPSSEE------GLTFRGIPNSISI 839
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 36.6 bits (83), Expect = 0.018 Identities = 18/34 (52%), Positives = 22/34 (64%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LL+PN+ GLT +GIPNSISI Sbjct: 839 PVQLPYTLLHPNSE-------GLTCRGIPNSISI 865
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P PY LL+P + + GLT KGIPNS+SI Sbjct: 832 PVNVPYTLLFPTSEE------GLTGKGIPNSVSI 859
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 35.0 bits (79), Expect = 0.051 Identities = 18/34 (52%), Positives = 20/34 (58%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P K PY +L P D GLT +GIPNSISI Sbjct: 834 PVKMPYTVLLPTCEDE-----GLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 35.0 bits (79), Expect = 0.051 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LL+P++ + GLT +GIPNSISI Sbjct: 837 PVQLPYTLLHPSSKE------GLTFRGIPNSISI 864
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 34.7 bits (78), Expect = 0.067 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P PY LL+P + GLT KGIPNS+SI Sbjct: 834 PVNAPYTLLFPTSE------GGLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 34.7 bits (78), Expect = 0.067 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P PY LL+P + GLT KGIPNS+SI Sbjct: 833 PVNAPYTLLFPTSE------GGLTGKGIPNSVSI 860
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 34.7 bits (78), Expect = 0.067 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LL H+ + GLT KGIPNSISI Sbjct: 837 PVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 P + PY LL P++ + GLT +GIPNSISI Sbjct: 830 PVQMPYTLLLPSSKE------GLTFRGIPNSISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 32.7 bits (73), Expect = 0.25 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -2 Query: 241 KFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K PY LL+P++ G+T +GIPNS+SI Sbjct: 834 KMPYTLLFPSSE------GGVTGRGIPNSVSI 859
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 247 PAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 PAK PY LLYP++ + GLT +GI Sbjct: 720 PAKMPYTLLYPSSEE------GLTFRGI 741
>Y2172_STRP8 (P60362) UPF0297 protein spyM18_2172| Length = 89 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y2114_STRP1 (P68886) UPF0297 protein SPy2114/M5005_Spy1797| Length = 89 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1798_STRP3 (P60361) UPF0297 protein SpyM3_1798/SPs1796| Length = 89 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1796_STRP6 (Q5X9I2) UPF0297 protein M6_Spy1796| Length = 89 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1781_STRPM (Q48QW9) UPF0297 protein M28_Spy1781| Length = 89 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>SYK_BACHD (Q9KGG4) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 501 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 54 LSQTHTTPISRQVSY--VANALYSSMVADGLNYMEMLLGMPLAVSPAA 191 L++ H P+ ++Y V N + V + L + G P+A+SP A Sbjct: 345 LAKEHNVPVKETMTYGHVVNEFFEHFVEEKLIQPTFVYGHPVAISPLA 392
>SYK_ENTFA (Q839A8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 54 LSQTHTTPIS--RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAA 191 L++ H I+ V ++ N + + V D L + G P+AVSP A Sbjct: 350 LAKEHNVEITDAMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLA 397
>SYK_MYCFE (Q49158) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 488 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 90 VSYVANALYSSMVADGLNYMEMLLGMPLAVSPAAA 194 + ++ NALY +V L L G P+ +SP +A Sbjct: 351 IGHIINALYEELVEPTLIQPTFLYGHPIEISPLSA 385
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2 Query: 235 PYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 PY LL P++ G+T +G+PNSISI Sbjct: 895 PYELLAPSSPP------GVTCRGVPNSISI 918 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,548,294 Number of Sequences: 219361 Number of extensions: 555552 Number of successful extensions: 1567 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1559 length of database: 80,573,946 effective HSP length: 58 effective length of database: 67,851,008 effective search space used: 1628424192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
