Clone Name | rbastl06e07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 468 bits (236), Expect = e-129 Identities = 239/240 (99%) Strand = Plus / Minus Query: 9 atctgctttatttattcggcttaaagagcaactgctgacatagtactgtcacagacacac 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1220 atctgctttatttattcggcttaaagagcaactgctgacatagtactgtcacagacacac 1161 Query: 69 actacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcatccatggtt 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 actacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcatccatggtt 1101 Query: 129 gccgatggcttaaattatatggagatgctgttggggatgcccttggcggtaagcccggca 188 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 gccgatggcttaaattagatggagatgctgttggggatgcccttggcggtaagcccggca 1041 Query: 189 gcggcgcccttgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccggg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 gcggcgcccttgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccggg 981
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 460 bits (232), Expect = e-126 Identities = 238/240 (99%) Strand = Plus / Minus Query: 9 atctgctttatttattcggcttaaagagcaactgctgacatagtactgtcacagacacac 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2791 atctgctttatttattcggcttaaagagcaactgctgacatagtactgtcacagacacac 2732 Query: 69 actacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcatccatggtt 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 actacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcatccatggtt 2672 Query: 129 gccgatggcttaaattatatggagatgctgttggggatgcccttggcggtaagcccggca 188 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2671 gccgatggcttagattagatggagatgctgttggggatgcccttggcggtaagcccggca 2612 Query: 189 gcggcgcccttgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccggg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2611 gcggcgcccttgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccggg 2552
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 145 bits (73), Expect = 8e-32 Identities = 94/101 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtgatcg 690 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct: 689 gaggtgttggggtagagcaacatgtaggggaacttggccgg 649
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 123 bits (62), Expect = 3e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 ||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||| Sbjct: 2060 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 2001 Query: 207 gaggtgttggggtagagcagcatgtagggaaact 240 ||||||||||||||||||||||||||||| |||| Sbjct: 2000 gaggtgttggggtagagcagcatgtaggggaact 1967
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 115 bits (58), Expect = 7e-23 Identities = 85/94 (90%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 ||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||| Sbjct: 4658 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 4599 Query: 207 gaggtgttggggtagagcagcatgtagggaaact 240 ||||||||||| ||||||||||||||||| |||| Sbjct: 4598 gaggtgttgggatagagcagcatgtaggggaact 4565
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 115 bits (58), Expect = 7e-23 Identities = 85/94 (90%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 ||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||| Sbjct: 2591 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 2532 Query: 207 gaggtgttggggtagagcagcatgtagggaaact 240 ||||||||||| ||||||||||||||||| |||| Sbjct: 2531 gaggtgttgggatagagcagcatgtaggggaact 2498
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2550 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 2549 gaggtgtttgggtagagcagcgtgtaggg 2521
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 30026445 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 30026386 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 30026385 gaggtgtttgggtagagcagcgtgtaggg 30026357 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggag 209 ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||| Sbjct: 27803100 gagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgtcggag 27803041 Query: 210 gtgttggggtagagcagcatgta 232 ||||||||||| ||||||||||| Sbjct: 27803040 gtgttggggtaaagcagcatgta 27803018 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 27821682 atggagatgctgttggggatgcccatggcggtgagccc 27821645 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccctt 172 |||| ||||||||||||||||||||| Sbjct: 14300022 atggtgatgctgttggggatgccctt 14300047
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 2691 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2632 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 2631 gaggtgtttgggtagagcagcgtgtaggg 2603
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 81306 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 81365 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 81366 gaggtgtttgggtagagcagcgtgtaggg 81394
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 30117867 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 30117808 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 30117807 gaggtgtttgggtagagcagcgtgtaggg 30117779 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggag 209 ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||| Sbjct: 27894424 gagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgtcggag 27894365 Query: 210 gtgttggggtagagcagcatgta 232 ||||||||||| ||||||||||| Sbjct: 27894364 gtgttggggtaaagcagcatgta 27894342 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 27913006 atggagatgctgttggggatgcccatggcggtgagccc 27912969 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccctt 172 |||| ||||||||||||||||||||| Sbjct: 14294997 atggtgatgctgttggggatgccctt 14295022
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 113 bits (57), Expect = 3e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct: 2724 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2665 Query: 207 gaggtgttggggtagagcagcatgtaggg 235 |||||||| |||||||||||| ||||||| Sbjct: 2664 gaggtgtttgggtagagcagcgtgtaggg 2636
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 153 atgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggaggtg 212 |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 1 atgctgttggggatgcccttggcggtgaggccggcggcggcacccttgtggtcttaggtg 60 Query: 213 ttggggtagagcagcatgtagggaaacttagccggg 248 || |||||||||||||||||||| | ||| |||||| Sbjct: 61 ttagggtagagcagcatgtaggggagcttggccggg 96
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 105 bits (53), Expect = 6e-20 Identities = 89/101 (88%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||||||||||||| |||| || ||||| | || |||| |||||||| Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtcg 843 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 842 gaggtgttggggtagagcagcatgtaggggaacttggccgg 802
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggag 209 ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||| Sbjct: 2594 gagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgtcggag 2535 Query: 210 gtgttggggtagagcagcatgta 232 ||||||||||| ||||||||||| Sbjct: 2534 gtgttggggtaaagcagcatgta 2512
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggag 209 ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||| Sbjct: 47230 gagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgtcggag 47171 Query: 210 gtgttggggtagagcagcatgta 232 ||||||||||| ||||||||||| Sbjct: 47170 gtgttggggtaaagcagcatgta 47148 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 65812 atggagatgctgttggggatgcccatggcggtgagccc 65775
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 150 gagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggag 209 ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||| Sbjct: 10793 gagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgtcggag 10852 Query: 210 gtgttggggtagagcagcatgta 232 ||||||||||| ||||||||||| Sbjct: 10853 gtgttggggtaaagcagcatgta 10875
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 91.7 bits (46), Expect = 1e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| ||| ||||||| |||| Sbjct: 2618 atggagatgctgtttggaatgcccttggcggtgatgccggcggcgtcgcccttcgtgtcg 2559 Query: 207 gaggtgttggggtagagcagcatgtagggaaact 240 ||||||||||||||||||||| ||||||| |||| Sbjct: 2558 gaggtgttggggtagagcagcgtgtaggggaact 2525
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 792 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 733 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 732 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 692
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 89.7 bits (45), Expect = 4e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 |||||||||||||| || |||||||||||||| | ||||| || |||| || | |||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgtcg 728 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 727 gaggtgttggggtagagcagcgtgtaggggaacttggccgg 687
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 73.8 bits (37), Expect = 2e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 206 ||||| |||||||| ||||||||| ||||||| ||||| | || ||| |||||||| Sbjct: 2654 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 2595 Query: 207 gaggtgttggggtagagcagcatgtagggaaacttagccgg 247 |||||||| ||||||||||||||||| || ||||| ||||| Sbjct: 2594 gaggtgtttgggtagagcagcatgtatgggaacttggccgg 2554
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2442 atggagatgctgttggggatgcccatggcggtgagccc 2405
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2921 atggagatgctgttggggatgcccatggcggtgagccc 2884
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2915 atggagatgctgttggggatgcccatggcggtgagccc 2878
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 1328 atggagatgctgttggggatgcccatggcggtgagccc 1291
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2593 atggagatgctgttggggatgcccatggcggtgagccc 2556
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2923 atggagatgctgttggggatgcccatggcggtgagccc 2886
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 1493 atggagatgctgttggggatgcccatggcggtgagccc 1456
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||||||||||||||| Sbjct: 1552 atggagatgctgttggggatgcccttggc 1524 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 210 gtgttggggtagagcagcatgtaggg 235 |||||||||||||| ||||||||||| Sbjct: 1486 gtgttggggtagagtagcatgtaggg 1461
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 56.0 bits (28), Expect = 5e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 145 atatggagatgctgttggggatgcccttggcggtaagccc 184 ||||||||||||||||||| |||||| |||| |||||||| Sbjct: 2898 atatggagatgctgttgggaatgcccatggcagtaagccc 2859
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggtaagccc 184 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 2760 atggagacgctgttggggatgcccatggcggtgagccc 2723 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 210 gtgttggggtagagcagcatgtaggg 235 ||||||||||| |||||||||||||| Sbjct: 2694 gtgttggggtacagcagcatgtaggg 2669
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||||||||||||| Sbjct: 22970456 atggagatgctgttggggatgccc 22970433
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Minus Query: 145 atatggagatgctgttggggatgcccttggcggtaagccc 184 ||||||||||||||||||| |||||| |||| || ||||| Sbjct: 365 atatggagatgctgttgggaatgcccatggcagtgagccc 326
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||||||||||||| Sbjct: 22898647 atggagatgctgttggggatgccc 22898624
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||||||||||||| Sbjct: 79733 atggagatgctgttggggatgccc 79710
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||||||||||||| Sbjct: 2912 atggagatgctgttggggatgccc 2889
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcc 169 ||||||||||||||||||||||| Sbjct: 2770 atggagatgctgttggggatgcc 2748
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccctt 172 |||| ||||||||||||||||||||| Sbjct: 49251 atggtgatgctgttggggatgccctt 49276
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccctt 172 |||| ||||||||||||||||||||| Sbjct: 111410 atggtgatgctgttggggatgccctt 111435
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Plus Query: 203 gtcggaggtgttggggtagagcagcatgtaggg 235 |||||||||||||||| | |||||| ||||||| Sbjct: 1892951 gtcggaggtgttgggggacagcagcgtgtaggg 1892983
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Plus Query: 203 gtcggaggtgttggggtagagcagcatgtaggg 235 |||||||||||||||| | |||||| ||||||| Sbjct: 21731 gtcggaggtgttgggggacagcagcgtgtaggg 21763
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Plus Query: 203 gtcggaggtgttggggtagagcagcatgtaggg 235 |||||||||||||||| | |||||| ||||||| Sbjct: 93429 gtcggaggtgttgggggacagcagcgtgtaggg 93461
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2877 atggagatgctgtttgggatgccc 2854
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 137475 gctgttggggatgcccttgccggt 137452
>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains an STS and GSSs, complete sequence Length = 60837 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cacagacacacactacacca 77 |||||||||||||||||||| Sbjct: 58806 cacagacacacactacacca 58825
>gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, complete sequence Length = 163201 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cccatctgctttatttattc 25 |||||||||||||||||||| Sbjct: 94513 cccatctgctttatttattc 94532
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 20830414 gctgttggggatgcccttgccggt 20830391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 5276967 atggagatgctgtttgggatgccc 5276990
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 3270 atggagatgctgtttgggatgccc 3293
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 2681 gctgttggggatgcccttgccggt 2658
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2876 atggagatgctgtttgggatgccc 2853
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2038 atggagatgctgtttgggatgccc 2015
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||| ||||||||||| Sbjct: 138 atggagatgctgctggggatgccc 161
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||| ||||||||||| Sbjct: 1210 atggagatgctgctggggatgccc 1187
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 21140649 gctgttggggatgcccttgccggt 21140626
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cacagacacacactacacca 77 |||||||||||||||||||| Sbjct: 40251 cacagacacacactacacca 40232 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,232,383 Number of Sequences: 3902068 Number of extensions: 2232383 Number of successful extensions: 42405 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42178 Number of HSP's gapped (non-prelim): 211 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)