ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 32 0.46
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 31 0.78
3LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 29 3.0
4SYK_BACHD (Q9KGG4) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--t... 28 5.1
5SYK_ENTFA (Q839A8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--t... 28 6.6
6LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 28 6.6

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 192 AAGLTAKGIPNSISI 148
           AAGLTAKGIPNSISI
Sbjct: 848 AAGLTAKGIPNSISI 862



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -3

Query: 192 AAGLTAKGIPNSISI 148
           AAG+TAKGIPNSISI
Sbjct: 852 AAGITAKGIPNSISI 866



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -3

Query: 192 AAGLTAKGIPNSISI 148
           AAGL+A+GIPNSISI
Sbjct: 856 AAGLSARGIPNSISI 870



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>SYK_BACHD (Q9KGG4) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 501

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 56  LSQTHTTPISRQVSY--VANALYSSMVADGLNYMEMLLGMPLAVSPAA 193
           L++ H  P+   ++Y  V N  +   V + L     + G P+A+SP A
Sbjct: 345 LAKEHNVPVKETMTYGHVVNEFFEHFVEEKLIQPTFVYGHPVAISPLA 392



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>SYK_ENTFA (Q839A8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 498

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 56  LSQTHTTPIS--RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAA 193
           L++ H   I+    V ++ N  + + V D L     + G P+AVSP A
Sbjct: 350 LAKEHNVEITDAMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLA 397



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -3

Query: 192 AAGLTAKGIPNSISI 148
           A G+TA+GIPNSISI
Sbjct: 849 AEGITARGIPNSISI 863


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,790,334
Number of Sequences: 219361
Number of extensions: 455829
Number of successful extensions: 1780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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