Clone Name | rbastl06e04 |
---|---|
Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 32.0 bits (71), Expect = 0.46 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = -3 Query: 192 AAGLTAKGIPNSISI 148 AAGLTAKGIPNSISI Sbjct: 848 AAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 31.2 bits (69), Expect = 0.78 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -3 Query: 192 AAGLTAKGIPNSISI 148 AAG+TAKGIPNSISI Sbjct: 852 AAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 192 AAGLTAKGIPNSISI 148 AAGL+A+GIPNSISI Sbjct: 856 AAGLSARGIPNSISI 870
>SYK_BACHD (Q9KGG4) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 501 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 56 LSQTHTTPISRQVSY--VANALYSSMVADGLNYMEMLLGMPLAVSPAA 193 L++ H P+ ++Y V N + V + L + G P+A+SP A Sbjct: 345 LAKEHNVPVKETMTYGHVVNEFFEHFVEEKLIQPTFVYGHPVAISPLA 392
>SYK_ENTFA (Q839A8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 28.1 bits (61), Expect = 6.6 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 56 LSQTHTTPIS--RQVSYVANALYSSMVADGLNYMEMLLGMPLAVSPAA 193 L++ H I+ V ++ N + + V D L + G P+AVSP A Sbjct: 350 LAKEHNVEITDAMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLA 397
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -3 Query: 192 AAGLTAKGIPNSISI 148 A G+TA+GIPNSISI Sbjct: 849 AEGITARGIPNSISI 863 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,790,334 Number of Sequences: 219361 Number of extensions: 455829 Number of successful extensions: 1780 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1780 length of database: 80,573,946 effective HSP length: 40 effective length of database: 71,799,506 effective search space used: 1723188144 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)