ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 373 bits (188), Expect = e-100 Identities = 191/192 (99%) Strand = Plus / Minus Query: 3 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 1169 Query: 63 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 1109 Query: 123 ccatggttgccgatggcttaaattatatggagatgctgttggggatgcccttggcggtaa 182 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1108 ccatggttgccgatggcttaaattagatggagatgctgttggggatgcccttggcggtaa 1049 Query: 183 gcccggcagcgg 194 |||||||||||| Sbjct: 1048 gcccggcagcgg 1037
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 365 bits (184), Expect = 3e-98 Identities = 190/192 (98%) Strand = Plus / Minus Query: 3 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2799 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 2740 Query: 63 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2739 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 2680 Query: 123 ccatggttgccgatggcttaaattatatggagatgctgttggggatgcccttggcggtaa 182 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 2679 ccatggttgccgatggcttagattagatggagatgctgttggggatgcccttggcggtaa 2620 Query: 183 gcccggcagcgg 194 |||||||||||| Sbjct: 2619 gcccggcagcgg 2608
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 67.9 bits (34), Expect = 1e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcgg 194 |||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagcccggcggcgg 704
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2442 atggagatgctgttggggatgcccatggcggtgagccc 2405
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2921 atggagatgctgttggggatgcccatggcggtgagccc 2884
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 65812 atggagatgctgttggggatgcccatggcggtgagccc 65775 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 152 gagatgctgttggggatgcccttggcggt 180 ||||||||||||||||||||||||||||| Sbjct: 47230 gagatgctgttggggatgcccttggcggt 47202 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 6185 atattgagatgctattggggatgcccctggc 6155
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 27821682 atggagatgctgttggggatgcccatggcggtgagccc 27821645 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 30026445 atggagatgctgttggggatgcccctggcggagaggccggcagcg 30026401 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 152 gagatgctgttggggatgcccttggcggt 180 ||||||||||||||||||||||||||||| Sbjct: 27803100 gagatgctgttggggatgcccttggcggt 27803072 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccctt 174 |||| ||||||||||||||||||||| Sbjct: 14300022 atggtgatgctgttggggatgccctt 14300047 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 27762056 atattgagatgctattggggatgcccctggc 27762026
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 ||||||||||||||||||||||||||||| || ||||| Sbjct: 4658 atggagatgctgttggggatgcccttggcagtgagccc 4621
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2915 atggagatgctgttggggatgcccatggcggtgagccc 2878
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 27913006 atggagatgctgttggggatgcccatggcggtgagccc 27912969 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 30117867 atggagatgctgttggggatgcccctggcggagaggccggcagcg 30117823 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 152 gagatgctgttggggatgcccttggcggt 180 ||||||||||||||||||||||||||||| Sbjct: 27894424 gagatgctgttggggatgcccttggcggt 27894396 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccctt 174 |||| ||||||||||||||||||||| Sbjct: 14294997 atggtgatgctgttggggatgccctt 14295022 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 27853379 atattgagatgctattggggatgcccctggc 27853349
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 ||||||||||||||||||||||||||||| || ||||| Sbjct: 2591 atggagatgctgttggggatgcccttggcagtgagccc 2554
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 1328 atggagatgctgttggggatgcccatggcggtgagccc 1291
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2593 atggagatgctgttggggatgcccatggcggtgagccc 2556
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 2923 atggagatgctgttggggatgcccatggcggtgagccc 2886
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| ||||||| ||||| Sbjct: 1493 atggagatgctgttggggatgcccatggcggtgagccc 1456
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 ||||||||||||||||||||||||||||| || ||||| Sbjct: 2060 atggagatgctgttggggatgcccttggcagtgagccc 2023
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcggagaggccggcagcg 2565
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 152 gagatgctgttggggatgcccttggcggt 180 ||||||||||||||||||||||||||||| Sbjct: 2594 gagatgctgttggggatgcccttggcggt 2566
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 2691 atggagatgctgttggggatgcccctggcggagaggccggcagcg 2647
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 81306 atggagatgctgttggggatgcccctggcggagaggccggcagcg 81350
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 152 gagatgctgttggggatgcccttggcggt 180 ||||||||||||||||||||||||||||| Sbjct: 10793 gagatgctgttggggatgcccttggcggt 10821 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 51838 atattgagatgctattggggatgcccctggc 51868
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagcccggcagcg 193 |||||||||||||||||||||||| |||||| || ||||||||| Sbjct: 2724 atggagatgctgttggggatgcccctggcggagaggccggcagcg 2680
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggc 177 ||||||||||||||||||||||||||||| Sbjct: 1552 atggagatgctgttggggatgcccttggc 1524
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 56.0 bits (28), Expect = 4e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 155 atgctgttggggatgcccttggcggtaagcccggcagcgg 194 |||||||||||||||||||||||||| || ||||| |||| Sbjct: 1 atgctgttggggatgcccttggcggtgaggccggcggcgg 40
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 56.0 bits (28), Expect = 4e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggcggtaagccc 186 ||||||||||||||||||| |||||| |||| |||||||| Sbjct: 2898 atatggagatgctgttgggaatgcccatggcagtaagccc 2859
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 52.0 bits (26), Expect = 6e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 |||||||||||||||||||||||| |||| || ||||| Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagccc 865
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 52.0 bits (26), Expect = 6e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggtaagccc 186 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 2760 atggagacgctgttggggatgcccatggcggtgagccc 2723
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 792 atggagatgctgtttggaatgcccttggcggt 761
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||||||||||||| Sbjct: 22970456 atggagatgctgttggggatgccc 22970433
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcccttggcggt 180 |||||||||||||| || |||||||||||||| Sbjct: 2618 atggagatgctgtttggaatgcccttggcggt 2587
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 48.1 bits (24), Expect = 0.010 Identities = 36/40 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggcggtaagccc 186 ||||||||||||||||||| |||||| |||| || ||||| Sbjct: 365 atatggagatgctgttgggaatgcccatggcagtgagccc 326
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||||||||||||| Sbjct: 22898647 atggagatgctgttggggatgccc 22898624
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||||||||||||| Sbjct: 79733 atggagatgctgttggggatgccc 79710
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||||||||||||| Sbjct: 2912 atggagatgctgttggggatgccc 2889
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.039 Identities = 23/23 (100%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgcc 171 ||||||||||||||||||||||| Sbjct: 2770 atggagatgctgttggggatgcc 2748
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccctt 174 |||| ||||||||||||||||||||| Sbjct: 49251 atggtgatgctgttggggatgccctt 49276
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccctt 174 |||| ||||||||||||||||||||| Sbjct: 111410 atggtgatgctgttggggatgccctt 111435
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||| ||||||||| Sbjct: 2877 atggagatgctgtttgggatgccc 2854
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gctgttggggatgcccttggcggt 180 ||||||||||||||||||| |||| Sbjct: 137475 gctgttggggatgcccttgccggt 137452
>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains an STS and GSSs, complete sequence Length = 60837 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cacagacacacactacacca 79 |||||||||||||||||||| Sbjct: 58806 cacagacacacactacacca 58825
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gctgttggggatgcccttggcggt 180 ||||||||||||||||||| |||| Sbjct: 20830414 gctgttggggatgcccttgccggt 20830391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||| ||||||||| Sbjct: 5276967 atggagatgctgtttgggatgccc 5276990
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||| ||||||||| Sbjct: 3270 atggagatgctgtttgggatgccc 3293
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gctgttggggatgcccttggcggt 180 ||||||||||||||||||| |||| Sbjct: 2681 gctgttggggatgcccttgccggt 2658
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||| ||||||||| Sbjct: 2876 atggagatgctgtttgggatgccc 2853
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||||| ||||||||| Sbjct: 2038 atggagatgctgtttgggatgccc 2015
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||| ||||||||||| Sbjct: 138 atggagatgctgctggggatgccc 161
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 atggagatgctgttggggatgccc 172 |||||||||||| ||||||||||| Sbjct: 1210 atggagatgctgctggggatgccc 1187
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gctgttggggatgcccttggcggt 180 ||||||||||||||||||| |||| Sbjct: 21140649 gctgttggggatgcccttgccggt 21140626
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cacagacacacactacacca 79 |||||||||||||||||||| Sbjct: 40251 cacagacacacactacacca 40232
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 2590 atattgagatgctattggggatgcccctggc 2560
>gb|AC158594.12| Mus musculus 10 BAC RP23-197I5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 218257 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 aagcaaatctgctttattt 23 ||||||||||||||||||| Sbjct: 167360 aagcaaatctgctttattt 167378
>gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosome 8, complete sequence Length = 179978 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gtactgtcacagacacaca 71 ||||||||||||||||||| Sbjct: 29878 gtactgtcacagacacaca 29860
>gb|AC108821.6| Mus musculus chromosome 15, clone RP23-61D6, complete sequence Length = 216909 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 cagacacacactacaccaa 80 ||||||||||||||||||| Sbjct: 164161 cagacacacactacaccaa 164143
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 atagtactgtcacagacacacac 72 |||||||||||||| |||||||| Sbjct: 86874 atagtactgtcacacacacacac 86852
>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189477 Score = 38.2 bits (19), Expect = 9.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 46 tgacatagtactgtcacagacacacac 72 ||||||| | ||||||||||||||||| Sbjct: 109626 tgacatactgctgtcacagacacacac 109600
>ref|XM_843236.1| PREDICTED: Canis familiaris similar to testis-specific LRR protein (LOC606813), mRNA Length = 900 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 152 gagatgctgttggggatgc 170 ||||||||||||||||||| Sbjct: 491 gagatgctgttggggatgc 473
>emb|BX957328.6| Zebrafish DNA sequence from clone CH211-187F22, complete sequence Length = 106510 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 111 ccctttattcatccatggttgcc 133 ||||||||| ||||||||||||| Sbjct: 6280 ccctttattaatccatggttgcc 6302
>gb|AC123948.4| Mus musculus BAC clone RP23-105C3 from chromosome 10, complete sequence Length = 214819 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 54 tactgtcacagacacacactaca 76 |||||||||||| |||||||||| Sbjct: 113776 tactgtcacagagacacactaca 113798
>gb|AC004682.1|HUAC004682 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-259H10, complete sequence Length = 189134 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 tactgtcacagacacacac 72 ||||||||||||||||||| Sbjct: 119758 tactgtcacagacacacac 119740
>gb|AC123790.4| Mus musculus BAC clone RP24-287C19 from chromosome 1, complete sequence Length = 175833 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 22 ttattcggcttaaagagcaactg 44 ||||| ||||||||||||||||| Sbjct: 152015 ttattaggcttaaagagcaactg 151993
>gb|AC122865.3| Mus musculus BAC clone RP23-143B2 from 8, complete sequence Length = 201139 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gtactgtcacagacacaca 71 ||||||||||||||||||| Sbjct: 36410 gtactgtcacagacacaca 36428
>gb|AC113318.8| Mus musculus chromosome 3, clone RP23-442I7, complete sequence Length = 213409 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gtactgtcacagacacaca 71 ||||||||||||||||||| Sbjct: 52310 gtactgtcacagacacaca 52328
>gb|AC153523.7| Mus musculus 10 BAC RP23-463C2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200141 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aagcaaatctgctttattt 23 ||||||||||||||||||| Sbjct: 152708 aagcaaatctgctttattt 152690
>emb|CR407560.11| Zebrafish DNA sequence from clone CH211-180L14, complete sequence Length = 127482 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 ccctttattcatccatggttgcc 133 ||||||||| ||||||||||||| Sbjct: 99163 ccctttattaatccatggttgcc 99141
>emb|BX957230.5| Zebrafish DNA sequence from clone DKEY-106I11 in linkage group 6, complete sequence Length = 68670 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 111 ccctttattcatccatggttgcc 133 ||||||||| ||||||||||||| Sbjct: 34169 ccctttattaatccatggttgcc 34191
>gb|DQ378287.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid 42I6, complete sequence Length = 39292 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 157 gctgttggggatgcccttg 175 ||||||||||||||||||| Sbjct: 38908 gctgttggggatgcccttg 38890
>gb|AC160945.5| Mus musculus 10 BAC RP24-187J13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168109 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 agatgctgttggggatgcc 171 ||||||||||||||||||| Sbjct: 72023 agatgctgttggggatgcc 72005
>emb|BX248501.7| Zebrafish DNA sequence from clone CH211-236O17 in linkage group 11, complete sequence Length = 93385 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 111 ccctttattcatccatggttgcc 133 ||||||||||||| ||||||||| Sbjct: 63990 ccctttattcatcaatggttgcc 64012
>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25, complete sequence Length = 151830 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 ccctttattcatccatggttgcc 133 ||||||||||||||| ||||||| Sbjct: 74074 ccctttattcatccagggttgcc 74052
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 2656 atattgagatgctattggggatgcccctggc 2626
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 38.2 bits (19), Expect = 9.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 147 atatggagatgctgttggggatgcccttggc 177 |||| |||||||| |||||||||||| |||| Sbjct: 2664 atattgagatgctattggggatgcccctggc 2634
>emb|BX649525.14| Zebrafish DNA sequence from clone CH211-85E10 in linkage group 22, complete sequence Length = 180584 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatctgctttatttattc 27 ||||||||||||||||||| Sbjct: 33445 aaatctgctttatttattc 33463
>emb|AL845481.5| Zebrafish DNA sequence from clone DKEY-46N18 in linkage group 17, complete sequence Length = 237313 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 ccctttattcatccatggttgcc 133 ||||||||| ||||||||||||| Sbjct: 201077 ccctttattaatccatggttgcc 201055
>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 279677 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 agatgctgttggggatgcc 171 ||||||||||||||||||| Sbjct: 5128 agatgctgttggggatgcc 5146
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 cgtggcgaacgccctttat 118 ||||||||||||||||||| Sbjct: 2568874 cgtggcgaacgccctttat 2568892 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,924,746 Number of Sequences: 3902068 Number of extensions: 1924746 Number of successful extensions: 209103 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 208569 Number of HSP's gapped (non-prelim): 534 length of query: 194 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 172 effective length of database: 17,147,199,772 effective search space: 2949318360784 effective search space used: 2949318360784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
