Clone Information

BLAST Search Result

Clone Name	rbastl06e01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UBE4A_PONPY (Q5R9G3) Ubiquitin conjugation factor E4 A	73	2e-13
2	UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A	73	2e-13
3	UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A	70	1e-12
4	UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin f...	59	2e-09
5	UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquiti...	55	3e-08
6	UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquiti...	54	1e-07
7	UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4	53	2e-07
8	UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin f...	52	5e-07
9	STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein...	37	0.012
10	STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein...	35	0.034
11	STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein...	35	0.034
12	LOLD2_RHOBA (Q7UPK3) Lipoprotein-releasing system ATP-binding pr...	32	0.49
13	PRP19_CAEEL (Q10051) PRP19/PSO4 homolog	31	0.83
14	PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homol...	30	1.4
15	PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	30	1.4
16	PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	30	1.4
17	PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	30	1.9
18	HLDE_PSESM (Q87VF4) Bifunctional protein hldE [Includes: D-beta-...	29	2.4
19	HLDE_PSEPK (Q88D93) Bifunctional protein hldE [Includes: D-beta-...	29	2.4
20	IPMK_RAT (Q99NI4) Inositol polyphosphate multikinase (EC 2.7.1.1...	28	4.1
21	IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1...	28	4.1
22	OPSD_PETMA (Q98980) Rhodopsin	28	4.1
23	DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-re...	28	5.4
24	DSVA_DESVH (P45574) Sulfite reductase, dissimilatory-type alpha ...	28	5.4
25	CAC2D_RAT (P54290) Dihydropyridine-sensitive L-type, calcium cha...	28	7.0
26	CAC2D_HUMAN (P54289) Dihydropyridine-sensitive L-type, calcium c...	28	7.0
27	YDZB_SCHPO (O13718) Hypothetical protein C14C4.11 in chromosome I	28	7.0
28	OPSD_LAMJA (P22671) Rhodopsin	28	7.0
29	OPSG_ORYLA (P87366) Green-sensitive opsin (Green cone photorecep...	28	7.0
30	OPSG4_BRARE (Q9W6A6) Green-sensitive opsin-4 (Green cone photore...	28	7.0
31	OPSG3_BRARE (Q8AYM7) Green-sensitive opsin-3 (Green cone photore...	28	7.0
32	UPPS_NITEU (Q82TZ9) Undecaprenyl pyrophosphate synthetase (EC 2....	27	9.2
33	DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-re...	27	9.2
34	ZPR1_SCHPO (O13724) Zinc-finger protein zpr1	27	9.2
35	OPSB_ANOCA (P51471) Blue-sensitive opsin (Blue photoreceptor pig...	27	9.2
36	OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensi...	27	9.2
37	PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (...	27	9.2
38	NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exch...	27	9.2
39	OPSG2_BRARE (Q8AYM8) Green-sensitive opsin-2 (Green cone photore...	27	9.2
40	OPSG1_BRARE (Q9W6A5) Green-sensitive opsin-1 (Green cone photore...	27	9.2
41	HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)	27	9.2
42	SPORA_IPOBA (P10917) Sporamin A precursor	27	9.2

>UBE4A_PONPY (Q5R9G3) Ubiquitin conjugation factor E4 A|
          Length = 1066

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 198
            V+LPSSRVT+DR  I RHLLSD TDPFNRS LT D + P+T+LK +I+ ++  ++ +K +
Sbjct: 1005 VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064

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>UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A|
          Length = 1066

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 198
            V+LPSSRVT+DR  I RHLLSD TDPFNRS LT D + P+T+LK +I+ ++  ++ +K +
Sbjct: 1005 VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064

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>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A|
          Length = 1066

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 45/60 (75%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 198
            V+LPSSRVT+D   I RHLLSD TDPFNRS LT D + P+T+LK +I+ ++  ++ +K +
Sbjct: 1005 VVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064

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>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion|
            degradation protein 2) (UB fusion protein 2)
          Length = 1010

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 198
            V+LP S ++IDR  I  HLLSD TDPFNR+ LT D + P+  L+  I  F++S++++  R
Sbjct: 948  VVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFLKSKRNKHSR 1007

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>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
            degradation protein 2) (Ufd2a)
          Length = 1173

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 29/56 (51%), Positives = 40/56 (71%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQS 210
            V LPS  V +DR +I+RHLL+  TDPFNR  LT+ ML P  +LK +I+ ++R +QS
Sbjct: 1116 VRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 1170

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>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
            degradation protein 2) (Homozygously deleted in
            neuroblastoma 1)
          Length = 1302

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQS 210
            V LPS  + +DR +I+RHLL+  TDPFNR  LT+ ML P  +LK +I+ ++R +Q+
Sbjct: 1245 VRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 1299

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>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4|
          Length = 980

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 27/59 (45%), Positives = 42/59 (71%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKR 201
            V LPS  V +DR VI RHLLS   +PFNR+ L+ + L PD++LK +I+E++  +++ K+
Sbjct: 923  VKLPSGHV-MDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKAKIQEWICQKRNSKK 980

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>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion|
            degradation protein 2) (UB fusion protein 2)
          Length = 961

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/59 (42%), Positives = 38/59 (64%)
 Frame = -2

Query: 377  VILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKR 201
            VILP+S++ IDR  I  HLLSD TDPFNR  L  + + P+ +L+ +I  F + ++   +
Sbjct: 898  VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAK 956

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>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1)
          Length = 314

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 362 SRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDTDLKLRIEEFV 225
           S +T DR  I  HL   G  DP  RS LTQD LIP+  +K  I+ F+
Sbjct: 259 SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 305

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>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP) (CLL-associated antigen KW-8)
           (Antigen NY-C
          Length = 303

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 362 SRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDTDLKLRIEEFV 225
           S +T DR  I  HL   G  DP  RS LTQ+ LIP+  +K  I+ F+
Sbjct: 248 SGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFI 294

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>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP)
          Length = 304

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 362 SRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDTDLKLRIEEFV 225
           S +T DR  I  HL   G  DP  RS LTQ+ LIP+  +K  I+ F+
Sbjct: 249 SGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFI 295

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>LOLD2_RHOBA (Q7UPK3) Lipoprotein-releasing system ATP-binding protein lolD 2|
          Length = 255

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = +3

Query: 141 SSLHHISSTIRLP--------GLRVDSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAV 296
           S+L H+ +T+  P        G R+D+    R    D++ N+Q+ I  ++ H+L EL A+
Sbjct: 52  STLMHLLATLDQPDSGEVWFDGTRIDNQSRARR---DQYRNSQIGIIFQFYHLLPELSAI 108

Query: 297 EWISA 311
           E + A
Sbjct: 109 ENVLA 113

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>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog|
          Length = 492

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 347 DRPVIVRHLLSDGTDPFNRSQLTQDMLI 264
           DR +IV+ +  +GTDP +  +L++D L+
Sbjct: 26  DRRLIVKFIAENGTDPISHGELSEDQLV 53

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>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal|
           differentiation-related gene protein)
          Length = 504

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 374 ILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 264
           + P S    +R +I +++  +GTDP N   L+++ LI
Sbjct: 17  VSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53

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>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (Nuclear matrix protein SNEV)
          Length = 504

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 374 ILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 264
           + P S    +R +I +++  +GTDP N   L+++ LI
Sbjct: 17  VSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53

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>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (hPso4)
          Length = 504

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 374 ILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 264
           + P S    +R +I +++  +GTDP N   L+++ LI
Sbjct: 17  VSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53

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>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)|
          Length = 505

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 374 ILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 264
           + P S    +R +I +++  +GTDP N   L+++ LI
Sbjct: 17  VSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLI 53

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>HLDE_PSESM (Q87VF4) Bifunctional protein hldE [Includes: D-beta-D-heptose|
           7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose
           7-phosphotransferase); D-beta-D-heptose 1-phosphate
           adenosyltransferase (EC 2.7.7.-)]
          Length = 474

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 192 DSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAVEWISAITEQMPNN 335
           D   + RL GP +  N+      R   VL+ LGAV+W+ +  E  P N
Sbjct: 375 DDASVSRLKGPGRPINS----VDRRMAVLAGLGAVDWVISFPEGTPEN 418

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>HLDE_PSEPK (Q88D93) Bifunctional protein hldE [Includes: D-beta-D-heptose|
           7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose
           7-phosphotransferase); D-beta-D-heptose 1-phosphate
           adenosyltransferase (EC 2.7.7.-)]
          Length = 473

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 192 DSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAVEWISAITEQMPNN 335
           D   + RL GP +  N+      R   VL+ LGAV+W+ +  E  P N
Sbjct: 375 DDASVSRLKGPGRPINS----VDRRMAVLAGLGAVDWVISFPEGTPEN 418

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>IPMK_RAT (Q99NI4) Inositol polyphosphate multikinase (EC 2.7.1.151)|
           (Inositol 1,3,4,6-tetrakisphosphate 5-kinase)
          Length = 396

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 168 IRLPGLRVDSPPLPRLLG 221
           +R PG   DSPP+PRLLG
Sbjct: 10  LRPPGSTGDSPPVPRLLG 27

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>IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1.151)|
           (Inositol 1,3,4,6-tetrakisphosphate 5-kinase)
          Length = 396

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 168 IRLPGLRVDSPPLPRLLG 221
           +R PG   DSPP+PRLLG
Sbjct: 10  LRPPGSTGDSPPVPRLLG 27

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>OPSD_PETMA (Q98980) Rhodopsin|
          Length = 353

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L+ WS  L  GM  S GPD +++N
Sbjct: 172 LVGWSRYLPEGMQCSCGPDYYTLN 195

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>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3)
          Length = 1110

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 162 STIRLPGLRVDSPPLPRL---LGPDKFFNAQLEICIRYQHVLSELGAVEWISAITEQMPN 332
           ++IR+PG + + PPLP L           A LE+   +   LSE   +E    + E M  
Sbjct: 76  ASIRIPGSKKERPPLPNLKTAFASSDCSAAPLEMMENFPKPLSENELLELFEKMMEDMNL 135

Query: 333 N 335
           N
Sbjct: 136 N 136

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>DSVA_DESVH (P45574) Sulfite reductase, dissimilatory-type alpha subunit (EC|
           1.8.99.3) (Desulfoviridin alpha subunit)
           (Hydrogensulfite reductase alpha subunit)
          Length = 436

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 145 HSTISAAPSGSPVSESTALRFLDCWDLTNSSMRNLRSVSG 264
           H+   A PSG   S     +  D WDL  S + N+   +G
Sbjct: 97  HTVRVAQPSGKYYSADYLRQLCDIWDLRGSGLTNMHGSTG 136

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>CAC2D_RAT (P54290) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1091

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 251 LKLRIEEFVRSQQSRKRRAVDSETGEPD 168
           +K +IEE +   +S+K +  DSET +PD
Sbjct: 612 IKAKIEETITQARSKKGKMKDSETLKPD 639

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>CAC2D_HUMAN (P54289) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1091

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 302 PFNRSQLTQDMLIPDTD---LKLRIEEFVRSQQSRKRRAVDSETGEPD 168
           P N +  +  +++P      +K ++EE +   +S+K +  DSET +PD
Sbjct: 592 PVNGTDYSLALVLPTYSFYYIKAKLEETITQARSKKGKMKDSETLKPD 639

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>YDZB_SCHPO (O13718) Hypothetical protein C14C4.11 in chromosome I|
          Length = 734

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 142 VHSTISAA--PSGSPVSESTALRFLDCWDLTNSSMRNLRSVSGINMS 276
           V S +SA+  P G P+S+  A++ L+  D    +++ L   + +N++
Sbjct: 75  VKSKVSASQEPDGPPISKEEAIKLLERLDSCTETVKKLEKYTRLNLT 121

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>OPSD_LAMJA (P22671) Rhodopsin|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195

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>OPSG_ORYLA (P87366) Green-sensitive opsin (Green cone photoreceptor pigment)|
           (KFH-G)
          Length = 345

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 47
           L+ WS  +  G+ +S GPD +++    N     + + +C FC
Sbjct: 173 LVGWSRYIPEGIQVSCGPDYYTLAPGFNNESFVMYMFSCHFC 214

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>OPSG4_BRARE (Q9W6A6) Green-sensitive opsin-4 (Green cone photoreceptor pigment|
           4) (Opsin-1, medium-wave-sensitive 4) (Opsin RH2-4)
          Length = 349

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195

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>OPSG3_BRARE (Q8AYM7) Green-sensitive opsin-3 (Green cone photoreceptor pigment|
           3) (Opsin-1, medium-wave-sensitive 3) (Opsin RH2-3)
          Length = 349

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195

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>UPPS_NITEU (Q82TZ9) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 263

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
 Frame = -2

Query: 368 PSSRVTIDRPVIVRHL-LSDGTDP--------------FNRSQLT------QDMLIPDTD 252
           P S VT D P I RHL L+D  +P              F   QL        D L PD D
Sbjct: 163 PDSAVTFDEPDIARHLALADAPEPDLFIRTGGECRISNFLLWQLAYTELYFTDTLWPDFD 222

Query: 251 LKLRIEEFVRSQQSRKRR 198
               ++E + S + R+RR
Sbjct: 223 AS-ALDEAIASYRKRERR 239

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>DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3) (mDIA2) (p134mDIA2)
          Length = 1171

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 87  PFTEN*SGPKL-MSIPAFSSSLHHISSTIRLPGLRVDSPPLPRL 215
           P+      PKL ++I   +  +    ++IR+PG + + PPLP L
Sbjct: 29  PYEPGEKRPKLHLNIRTLTDDMLDKFASIRIPGSKKERPPLPHL 72

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>ZPR1_SCHPO (O13724) Zinc-finger protein zpr1|
          Length = 459

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 305 DPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRRAVD---SETGEPDG 165
           DP ++S L Q+   PD D  + IEE+ RS Q  +   ++   +E  E DG
Sbjct: 408 DPLSQSYL-QNYYAPDPDPNMTIEEYERSFQVNEELGLNDMKTENYEKDG 456

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>OPSB_ANOCA (P51471) Blue-sensitive opsin (Blue photoreceptor pigment) (RH2|
           opsin)
          Length = 355

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LLGWSRYIPEGMQCSCGPDYYTLN 195

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>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)|
           (Blue cone photoreceptor pigment) (Opsin SWS-2)
          Length = 354

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVNGV--DCSLQI*ACTFCHALPY 32
           L+ WS  +  G+  S GPD ++ N    + S  +    FC A+P+
Sbjct: 179 LLGWSRYIPEGLQCSCGPDWYTTNNKFNNESYVMFLFCFCFAVPF 223

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>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 223 LTNSSMRNLRSVSGINMS*VSWERLNGSVPS 315
           LT S  R L S + + +  +SW RL G++PS
Sbjct: 427 LTGSMPRWLSSSNELQLLDLSWNRLTGAIPS 457

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>NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4)
          Length = 529

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 163 LLIWWSELLKAGMDISFGPDQFSVNGV 83
           ++IWW+ L++  + I+    QF+ +GV
Sbjct: 383 VIIWWAGLMRGAVSIALAFKQFTYSGV 409

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>OPSG2_BRARE (Q8AYM8) Green-sensitive opsin-2 (Green cone photoreceptor pigment|
           2) (Opsin-1, medium-wave-sensitive 2) (Opsin RH2-2)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 47
           L  WS  +  GM  S GPD +++    N     L + +C FC
Sbjct: 172 LFGWSRYIPEGMQTSCGPDYYTLNPEFNNESYVLYMFSCHFC 213

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>OPSG1_BRARE (Q9W6A5) Green-sensitive opsin-1 (Green cone photoreceptor pigment|
           1) (Opsin-1, medium-wave-sensitive 1) (Opsin RH2-1)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 160 LIWWSELLKAGMDISFGPDQFSVN 89
           L  WS  L  GM  S GPD +++N
Sbjct: 172 LFGWSRYLPEGMQTSCGPDYYTLN 195

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>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)|
          Length = 3133

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 166 PSGSPVSESTALRFLDCWDL 225
           PSG  +SES+AL F D W L
Sbjct: 394 PSGGGMSESSALIFADSWKL 413

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>SPORA_IPOBA (P10917) Sporamin A precursor|
          Length = 219

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 142 LLKAGMDISFGPDQFSVNGVDCSLQI*ACTFC 47
           LLKAG  +S   +QF +  VD +L     T+C
Sbjct: 149 LLKAGEFVSDNSNQFKIEVVDANLNFYKLTYC 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,470,770
Number of Sequences: 219361
Number of extensions: 998837
Number of successful extensions: 2676
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2676
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result