ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete seq... 40 0.82
2gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing... 40 0.82
3gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome... 38 3.2
4gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, co... 38 3.2
5emb|AJ720031.1| Gallus gallus mRNA for hypothetical protein, clo... 38 3.2
6gb|AC116693.23| Mus musculus chromosome 8, clone RP24-372D19, co... 38 3.2
7ref|NM_001006231.1| Gallus gallus similar to hypothetical protei... 38 3.2
8emb|AL808026.10| Mouse DNA sequence from clone RP23-200N16 on ch... 38 3.2

>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence
          Length = 156486

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    gaatgttacatttcttcttt 77
             ||||||||||||||||||||
Sbjct: 58548 gaatgttacatttcttcttt 58567



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>gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing the bambi gene,
             complete sequence
          Length = 75688

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    gaatgttacatttcttcttt 77
             ||||||||||||||||||||
Sbjct: 27440 gaatgttacatttcttcttt 27421



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>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence
          Length = 195860

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     atgttacatttcttctttc 78
              |||||||||||||||||||
Sbjct: 146020 atgttacatttcttctttc 146002



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>gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, complete sequence
          Length = 170361

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   actgagttcttccagttaa 51
            |||||||||||||||||||
Sbjct: 5771 actgagttcttccagttaa 5789



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>emb|AJ720031.1| Gallus gallus mRNA for hypothetical protein, clone 9l4
          Length = 2495

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cactgagttcttccagtta 50
            |||||||||||||||||||
Sbjct: 1478 cactgagttcttccagtta 1460



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>gb|AC116693.23| Mus musculus chromosome 8, clone RP24-372D19, complete sequence
          Length = 163719

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     actgagttcttccagttaa 51
              |||||||||||||||||||
Sbjct: 159780 actgagttcttccagttaa 159798



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>ref|NM_001006231.1| Gallus gallus similar to hypothetical protein FLJ21908 (LOC417811),
            mRNA
          Length = 2495

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cactgagttcttccagtta 50
            |||||||||||||||||||
Sbjct: 1478 cactgagttcttccagtta 1460



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>emb|AL808026.10| Mouse DNA sequence from clone RP23-200N16 on chromosome X, complete
              sequence
          Length = 214016

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     tgcactgagttcttccagt 48
              |||||||||||||||||||
Sbjct: 109018 tgcactgagttcttccagt 109000


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 749,631
Number of Sequences: 3902068
Number of extensions: 749631
Number of successful extensions: 45373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45364
Number of HSP's gapped (non-prelim): 9
length of query: 79
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 58
effective length of database: 17,151,101,840
effective search space: 994763906720
effective search space used: 994763906720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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