ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06d08 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 31.2 bits (69), Expect = 0.62 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = -2 Query: 405 TRTPSHSQIPLASRKASNGQNRSGRQPLSGTDSRRLSSNGRHSGTK 268 +R+ SHS+ SR + ++RSG S + SR S +G HS +K Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSK 231
>RT30_MOUSE (Q9D0G0) Mitochondrial 28S ribosomal protein S30 (S30mt) (MRP-S30)| Length = 442 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +2 Query: 206 HDKQLKESQEKRMHNHFRNPYFVPECLPFDESLLLSVPLKGCLPD 340 H L+ + HN R +PE +P D S+ +P+ C PD Sbjct: 219 HIDALRYQINDKPHNQIRISKQLPEFVPLDYSIPTEIPVMKCKPD 263
>NAL10_MOUSE (Q8CCN1) NACHT-, LRR- and PYD-containing protein 10| Length = 673 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -2 Query: 366 RKASNGQNRSGRQPLSGTDSRRLSS 292 +KASNG++R +P G +RRL+S Sbjct: 610 KKASNGKSRGAEEPAPGVRNRRLAS 634
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 405 TRTPSHSQIPLASRKASNGQNRSGRQPLSGTDSRRLSSNGRHSGTK 268 +R+ SHS+ SR + ++RSG S + SR S +G S +K Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSK 231
>PURT_METJA (Q58881) Probable phosphoribosylglycinamide formyltransferase 2 (EC| 2.1.2.-) (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 393 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 8/49 (16%) Frame = +3 Query: 252 ILGIPTSYQSVY----HLMKA----FCYRYHLKVAFQICFVHLRLFSTP 374 ILG+P S + ++ H++KA + +YH++ A ++ LRLF P Sbjct: 310 ILGLPVSTKLIHPGASHVIKAEINKYAPKYHIEDALKVPNTKLRLFGKP 358
>PRPA3_DROME (Q9W1V6) Phenoloxidase subunit A3 precursor (EC 1.14.18.1)| (Tyrosinase A3) (PO A3) Length = 683 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 395 QVIPKYHWRREKPQMDKTDLEGNL*VVPIAEGFHQMVDTLVRSR 264 Q+I +Y+ R M + NL PIAEG+ +D+LV SR Sbjct: 241 QIIARYNAERLSNHMARVQPFNNL-DEPIAEGYFPKMDSLVASR 283
>PDR8_YEAST (Q06149) Transcription factor PDR8 (Pleiotropic drug resistance| protein 8) Length = 701 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -3 Query: 242 FFFLGFLSVV--CHEGL*DCSQVQE*VTISPIGCLSVVSCDLNSW 114 FF L ++SV+ C +G+ D +Q + + GC+S+ D++ W Sbjct: 286 FFLLSYISVMINCTDGVWDATQGVDLINELCQGCISLGLNDIDKW 330
>ISCS_HELPY (O25008) Cysteine desulfurase (EC 2.8.1.7)| Length = 387 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 182 LENNLTTPHDKQLKESQEKRMHNHFRNP 265 L+NN TT D ++KE + + +H+ NP Sbjct: 7 LDNNATTRIDPKVKEIMDPFLRDHYGNP 34
>ISCS_HELPJ (Q9ZML2) Cysteine desulfurase (EC 2.8.1.7)| Length = 387 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 182 LENNLTTPHDKQLKESQEKRMHNHFRNP 265 L+NN TT D ++KE + + +H+ NP Sbjct: 7 LDNNATTRIDPKVKEIMDPFLRDHYGNP 34
>C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C4bp)| (Proline-rich protein) (PRP) Length = 597 Score = 24.6 bits (52), Expect(2) = 8.5 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 406 YKDTKSFPNTIGVEKSLKWT 347 YK T P T+ +K+L+WT Sbjct: 336 YKPTTDEPTTVICQKNLRWT 355 Score = 21.2 bits (43), Expect(2) = 8.5 Identities = 7/17 (41%), Positives = 10/17 (58%) Frame = -3 Query: 254 NDCAFFFLGFLSVVCHE 204 N C +F+ +S CHE Sbjct: 385 NHCVYFYGDEISFSCHE 401
>ARD3_ORYSA (Q7XNS7) Putative 1,2-dihydroxy-3-keto-5-methylthiopentene| dioxygenase 3 (EC 1.13.-.-) (Aci-reductone dioxygenase 3) Length = 206 Score = 27.3 bits (59), Expect = 8.9 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Frame = +2 Query: 125 DHNSPH*DNQLDLLSLTPVLENNLTT--------PHDKQLKESQEKRMHNHFRNPYFVPE 280 D PH DLL L +L+ L HD+ LK +E+R + H PE Sbjct: 26 DQRLPHRRQPDDLLPLAKLLDLGLVAMRLDADNHEHDENLKIMREQRGYLHMDIVELTPE 85 Query: 281 CLP---------FDESLLLSVPLKGCL 334 +P F+E L ++ CL Sbjct: 86 KMPNYEVMIKRFFEEHLHTDEEVRYCL 112
>YO04_BPL2 (P42539) Hypothetical 18.2 kDa protein (ORF4)| Length = 161 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -2 Query: 105 AITLFFIGLSGFVEFLAIPVMFIIYNIRKRK 13 A+T+FF GLS F+ +I +++ ++ K+K Sbjct: 12 ALTIFFYGLSWFIAVGSIMILWPVWEYLKKK 42
>DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 357 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = +3 Query: 240 ECTIILGIPTSYQSVYHLMKAFCYRYHLKVAFQICFVHLRLFSTPMV 380 ECTI+ + Y Y L ++ + Y K+ + C L S P + Sbjct: 51 ECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAI 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,823,741 Number of Sequences: 219361 Number of extensions: 995979 Number of successful extensions: 2479 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2479 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
