ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 40 4.1
2gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 40 4.1
3gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 40 4.1

>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aattttttacaagaatattc 99
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    aattttttacaagaatattc 177
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069



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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    atacattctagcaagaatgcaaaa 221
              ||||||||||| ||||||||||||
Sbjct: 102314 atacattctagtaagaatgcaaaa 102291



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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   atacattctagcaagaatgcaaaa 221
             ||||||||||| ||||||||||||
Sbjct: 30566 atacattctagtaagaatgcaaaa 30589


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,168,464
Number of Sequences: 3902068
Number of extensions: 3168464
Number of successful extensions: 57220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57209
Number of HSP's gapped (non-prelim): 11
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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