ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, comple... 40 0.42
2ref|NM_183547.2| Oryza sativa (japonica cultivar-group), mRNA 38 1.7
3gb|AF005268.1| Oryza sativa plakoglobin/armadillo/beta-catenin-l... 38 1.7
4gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, comple... 38 1.7
5gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete... 38 1.7
6gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, com... 38 1.7
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
9dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
10dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
11dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
12dbj|AK120201.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.7
13dbj|AK058409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.7
14dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 38 1.7
15gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence 36 6.6
16gb|AC149072.1| x. tropicalis BAC clone ISB1-341L17 containing ge... 36 6.6
17emb|Z75710.1|CED1081 Caenorhabditis elegans Cosmid D1081, comple... 36 6.6
18gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) ge... 36 6.6
19gb|AC149546.14| Medicago truncatula clone mth2-70o13, complete s... 36 6.6
20emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chr... 36 6.6
21emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chr... 36 6.6
22emb|BX927175.11| Zebrafish DNA sequence from clone CH211-237C7 i... 36 6.6
23gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Can... 36 6.6
24gb|AC079628.20| Homo sapiens 12 BAC RP11-688K16 (Roswell Park Ca... 36 6.6
25gb|AC023682.4| Drosophila melanogaster X BAC RP98-7F10 (Roswell ... 36 6.6
26gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Canc... 36 6.6
27gb|AC004683.3| Arabidopsis thaliana chromosome 2 clone T19C21 ma... 36 6.6
28gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 ma... 36 6.6
29gb|AC079263.17| Homo sapiens 12q BAC RP11-742E7 (Roswell Park Ca... 36 6.6
30gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7,... 36 6.6
31emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 i... 36 6.6
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.6
33gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 36 6.6
34dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 36 6.6
35emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in... 36 6.6
36dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic D... 36 6.6
37dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic D... 36 6.6
38emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chr... 36 6.6
39emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in... 36 6.6
40emb|Z81133.1|CET28B8 Caenorhabditis elegans Cosmid T28B8, comple... 36 6.6
41gb|AE003436.3| Drosophila melanogaster chromosome X, section 20 ... 36 6.6
42dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 36 6.6
43dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 36 6.6
44emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chr... 36 6.6
45dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:R... 36 6.6 
>gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, complete cds
          Length = 6201

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   aaaacacttatacaacatca 43
            ||||||||||||||||||||
Sbjct: 1305 aaaacacttatacaacatca 1286
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>ref|NM_183547.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1436

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    catgaaagaccccaaaaaa 27
            |||||||||||||||||||
Sbjct: 1415 catgaaagaccccaaaaaa 1433
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>gb|AF005268.1| Oryza sativa plakoglobin/armadillo/beta-catenin-like protein mRNA,
            partial cds
          Length = 1113

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    catgaaagaccccaaaaaa 27
            |||||||||||||||||||
Sbjct: 1020 catgaaagaccccaaaaaa 1038
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>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence
          Length = 257003

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aacacttatacaacatcag 44
             |||||||||||||||||||
Sbjct: 28195 aacacttatacaacatcag 28213
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>gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete sequence
          Length = 188791

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aacacttatacaacatcag 44
             |||||||||||||||||||
Sbjct: 68595 aacacttatacaacatcag 68613
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>gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, complete sequence
          Length = 205796

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    tgaaagaccccaaaaaaca 29
             |||||||||||||||||||
Sbjct: 50324 tgaaagaccccaaaaaaca 50306
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 23      aaaaacacttatacaacat 41
               |||||||||||||||||||
Sbjct: 3211998 aaaaacacttatacaacat 3212016
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      catgaaagaccccaaaaaa 27
              |||||||||||||||||||
Sbjct: 647309 catgaaagaccccaaaaaa 647291
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     catgaaagaccccaaaaaa 27
             |||||||||||||||||||
Sbjct: 31053 catgaaagaccccaaaaaa 31035
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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439B06
          Length = 135991

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      catgaaagaccccaaaaaa 27
              |||||||||||||||||||
Sbjct: 121914 catgaaagaccccaaaaaa 121896
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     aaaaacacttatacaacat 41
              |||||||||||||||||||
Sbjct: 126988 aaaaacacttatacaacat 127006
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>dbj|AK120201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037I12, full
            insert sequence
          Length = 1435

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    catgaaagaccccaaaaaa 27
            |||||||||||||||||||
Sbjct: 1414 catgaaagaccccaaaaaa 1432
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>dbj|AK058409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C05, full
           insert sequence
          Length = 845

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   catgaaagaccccaaaaaa 27
           |||||||||||||||||||
Sbjct: 824 catgaaagaccccaaaaaa 842
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    aaaaacacttatacaacat 41
             |||||||||||||||||||
Sbjct: 21691 aaaaacacttatacaacat 21709
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>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence
          Length = 183990

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    tgaaagaccccaaaaaac 28
             ||||||||||||||||||
Sbjct: 25959 tgaaagaccccaaaaaac 25942
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>gb|AC149072.1| x. tropicalis BAC clone ISB1-341L17 containing genes for vex1 and
            vent1, complete sequence
          Length = 65797

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 21   caaaaaacacttatacaa 38
            ||||||||||||||||||
Sbjct: 9182 caaaaaacacttatacaa 9199
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>emb|Z75710.1|CED1081 Caenorhabditis elegans Cosmid D1081, complete sequence
          Length = 38356

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    gaaagaccccaaaaaaca 29
             ||||||||||||||||||
Sbjct: 25743 gaaagaccccaaaaaaca 25760
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>gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) gene, complete cds;
             alternatively spliced isoforms
          Length = 219836

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 24    aaaacacttatacaacat 41
             ||||||||||||||||||
Sbjct: 25031 aaaacacttatacaacat 25048
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>gb|AC149546.14| Medicago truncatula clone mth2-70o13, complete sequence
          Length = 124127

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    aaaaaacacttatacaac 39
             ||||||||||||||||||
Sbjct: 53578 aaaaaacacttatacaac 53595
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>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3
              Contains part of the ABCC4 gene for ATP-binding cassette,
              sub-family C (CFTR/MRP), member 4, complete sequence
          Length = 182485

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 8      ccatgaaagaccccaaaaaaca 29
              ||||| ||||||||||||||||
Sbjct: 137472 ccatgcaagaccccaaaaaaca 137493
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>emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chromosome 1 Contains the
            5' end of the Adam23 gene for a disintegrin and
            metalloprotease domain 23, a pleckstrin homology
            domain-containing family A (phosphoinositide binding
            specific) member 3 (Plekha3) pseudogene, a px19-like
            protein (PX19) pseudogene and a CpG island, complete
            sequence
          Length = 207629

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 22   aaaaaacacttatacaac 39
            ||||||||||||||||||
Sbjct: 6358 aaaaaacacttatacaac 6341
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>emb|BX927175.11| Zebrafish DNA sequence from clone CH211-237C7 in linkage group 18,
             complete sequence
          Length = 97314

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    caaaaaacacttatacaa 38
             ||||||||||||||||||
Sbjct: 53011 caaaaaacacttatacaa 53028
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>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute
          Human BAC Library) complete sequence
          Length = 157801

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 19 cccaaaaaacacttatac 36
          ||||||||||||||||||
Sbjct: 11 cccaaaaaacacttatac 28
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>gb|AC079628.20| Homo sapiens 12 BAC RP11-688K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114632

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     acccatgaaagaccccaa 23
             ||||||||||||||||||
Sbjct: 76408 acccatgaaagaccccaa 76391
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>gb|AC023682.4| Drosophila melanogaster X BAC RP98-7F10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179236

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    atgaaagaccccaaaaaa 27
             ||||||||||||||||||
Sbjct: 52946 atgaaagaccccaaaaaa 52963
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>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193035

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     aaaacacttatacaacat 41
              ||||||||||||||||||
Sbjct: 140673 aaaacacttatacaacat 140656
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>gb|AC004683.3| Arabidopsis thaliana chromosome 2 clone T19C21 map ve018, complete
             sequence
          Length = 81467

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    ccccaaaaaacacttata 35
             ||||||||||||||||||
Sbjct: 78343 ccccaaaaaacacttata 78326
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>gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete
              sequence
          Length = 115359

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 18     ccccaaaaaacacttata 35
              ||||||||||||||||||
Sbjct: 110648 ccccaaaaaacacttata 110665
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>gb|AC079263.17| Homo sapiens 12q BAC RP11-742E7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 163900

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 19   cccaaaaaacacttatac 36
            ||||||||||||||||||
Sbjct: 2037 cccaaaaaacacttatac 2020
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>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence
          Length = 133030

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      gtgacccatgaaagaccc 20
              ||||||||||||||||||
Sbjct: 131925 gtgacccatgaaagaccc 131908
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>emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 in linkage group 14,
             complete sequence
          Length = 218178

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    agaccccaaaaaacactt 32
             ||||||||||||||||||
Sbjct: 40358 agaccccaaaaaacactt 40341
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 7       cccatgaaagaccccaaa 24
               ||||||||||||||||||
Sbjct: 5750183 cccatgaaagaccccaaa 5750200
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ccatgaaagaccccaaaa 25
             ||||||||||||||||||
Sbjct: 69961 ccatgaaagaccccaaaa 69978
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 18      ccccaaaaaacacttata 35
               ||||||||||||||||||
Sbjct: 2277228 ccccaaaaaacacttata 2277245
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>emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in linkage group 18,
              complete sequence
          Length = 150365

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     caaaaaacacttatacaa 38
              ||||||||||||||||||
Sbjct: 111543 caaaaaacacttatacaa 111526
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>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0701E03
          Length = 183245

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     cccatgaaagaccccaaa 24
             ||||||||||||||||||
Sbjct: 65712 cccatgaaagaccccaaa 65729
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>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0021C04
          Length = 162115

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      cccatgaaagaccccaaa 24
              ||||||||||||||||||
Sbjct: 142330 cccatgaaagaccccaaa 142347
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>emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chromosome X, complete
             sequence
          Length = 162246

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     acccatgaaagaccccaa 23
             ||||||||||||||||||
Sbjct: 36797 acccatgaaagaccccaa 36780
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>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18,
              complete sequence
          Length = 263615

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     caaaaaacacttatacaa 38
              ||||||||||||||||||
Sbjct: 206977 caaaaaacacttatacaa 206960
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>emb|Z81133.1|CET28B8 Caenorhabditis elegans Cosmid T28B8, complete sequence
          Length = 33969

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 22    aaaaaacacttatacaacatca 43
             ||||||||||||||||| ||||
Sbjct: 24600 aaaaaacacttatacaatatca 24621
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>gb|AE003436.3| Drosophila melanogaster chromosome X, section 20 of 74 of the complete
              sequence
          Length = 317322

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     atgaaagaccccaaaaaa 27
              ||||||||||||||||||
Sbjct: 223687 atgaaagaccccaaaaaa 223670
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>dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-44A17, complete
              sequence
          Length = 134973

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     aaaacacttatacaacat 41
              ||||||||||||||||||
Sbjct: 102245 aaaacacttatacaacat 102228
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>dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-2N10, complete
            sequence
          Length = 51000

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    ccatgaaagaccccaaaa 25
            ||||||||||||||||||
Sbjct: 2191 ccatgaaagaccccaaaa 2174
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>emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chromosome 2, complete
              sequence
          Length = 198497

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 24     aaaacacttatacaacat 41
              ||||||||||||||||||
Sbjct: 171509 aaaacacttatacaacat 171526
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>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete
              sequences
          Length = 125561

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      ccatgaaagaccccaaaa 25
              ||||||||||||||||||
Sbjct: 124966 ccatgaaagaccccaaaa 124949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 445,236
Number of Sequences: 3902068
Number of extensions: 445236
Number of successful extensions: 111505
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111321
Number of HSP's gapped (non-prelim): 184
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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