ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06d04 |
|---|---|
| Clone Library Name | barley_pub |
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 30.8 bits (68), Expect = 0.94 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +1 Query: 94 HILFTHTPDLQGGK*SSTNHTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTP 270 H+ T +P +G + H PPT+ T Q SP+ H+ P PR P +P Sbjct: 211 HVQPTPSPPSRGHQPQPPTHRHAPPTHRHAPPTHQPSPL--RHLPPSPRRQPQPPTYSP 267
>B4GT3_RAT (Q6P768) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N-a Length = 395 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 273 AGGQYRCCGC*PRKREYVVVKH 208 +GG+YR GC PR R ++V H Sbjct: 112 SGGRYRPAGCEPRSRTAIIVPH 133
>B4GT3_MOUSE (Q91YY2) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 395 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 273 AGGQYRCCGC*PRKREYVVVKH 208 +GG+YR GC PR R ++V H Sbjct: 112 SGGRYRPAGCEPRSRTAIIVPH 133
>B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 393 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 270 GGQYRCCGC*PRKREYVVVKH 208 GG+YR GC PR R ++V H Sbjct: 111 GGRYRPAGCEPRSRTAIIVPH 131
>B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 393 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 270 GGQYRCCGC*PRKREYVVVKH 208 GG+YR GC PR R ++V H Sbjct: 111 GGRYRPAGCEPRSRTAIIVPH 131
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 142 STNHTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPS 273 ++ H+ P+N + SAT+ PV +P P +P+L PS Sbjct: 140 NSRHSTQSPSNSVKSATASPVPVIS---VPSPVPPMISPVLAPS 180
>DBP5_SCHPO (Q09747) ATP-dependent RNA helicase dbp5 (EC 3.6.1.-)| Length = 503 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 38 PTYTTNAFLSVSTMPTQL-GIYSLLIHLTYRGVNKALQIILSIPPR 172 P ++ +F + P L GIYS+ + KAL ++LS PPR Sbjct: 109 PLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPR 154
>DBP5_CANAL (Q5AJD0) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 540 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 38 PTYTTNAFLSVSTMPTQL-GIYSLLIHLTYRGVNKALQIILSIPPR 172 P Y+ +F + P L G+Y++ + + KAL ++LS PPR Sbjct: 145 PLYSVKSFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLLSNPPR 190
>RON_HUMAN (Q04912) Macrophage-stimulating protein receptor precursor (EC| 2.7.10.1) (MSP receptor) (p185-Ron) (CDw136 antigen) [Contains: Macrophage-stimulating protein receptor alpha chain; Macrophage-stimulating protein receptor beta chain] Length = 1400 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 25 SRSCSYIYNQRLSLCFYHANSTWHILFT 108 S +C YI N +++C H S WH++ + Sbjct: 776 SPNCGYI-NSHITICGQHLTSAWHLVLS 802
>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA| topoisomerase III beta-1) Length = 862 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 75 PCQLNLAYTLYSYT*PTGG*IKLYKSY*ASPHELYYICYKSGVTSVSQPHTP 230 P +L+ ++ +YT P G IKLYK + + + SG S P P Sbjct: 638 PSRLHCSHCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCP 689
>TOP3B_HUMAN (O95985) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA| topoisomerase III beta-1) Length = 862 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 75 PCQLNLAYTLYSYT*PTGG*IKLYKSY*ASPHELYYICYKSGVTSVSQPHTP 230 P +L+ ++ +YT P G IKLYK + + + SG S P P Sbjct: 638 PSRLHCSHCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCP 689 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,370,889 Number of Sequences: 219361 Number of extensions: 843365 Number of successful extensions: 1920 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1919 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
