Clone Name | rbastl06d03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_382712.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG02536.1) partial mRNA Length = 7113 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 agtaccttgactacaccact 124 |||||||||||||||||||| Sbjct: 5150 agtaccttgactacaccact 5169
>emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173260 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ctagagtaccttgactacac 120 |||||||||||||||||||| Sbjct: 40036 ctagagtaccttgactacac 40055
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171699 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ctagagtaccttgactacac 120 |||||||||||||||||||| Sbjct: 165748 ctagagtaccttgactacac 165767
>ref|XM_514058.1| PREDICTED: Pan troglodytes LOC457582 (LOC457582), mRNA Length = 1920 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 1528 tacattgcacaaggaaaga 1546
>gb|BC026883.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone MGC:25112 IMAGE:4508495), complete cds Length = 2928 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2035 tacattgcacaaggaaaga 2053
>ref|NM_030934.3| Homo sapiens chromosome 1 open reading frame 25 (C1orf25), mRNA Length = 4359 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2049 tacattgcacaaggaaaga 2067
>ref|XM_854881.1| PREDICTED: Canis familiaris similar to N2,N2-dimethylguanosine tRNA methyltransferase-like, transcript variant 2 (LOC608468), mRNA Length = 2617 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2047 tacattgcacaaggaaaga 2065
>ref|XM_844760.1| PREDICTED: Canis familiaris similar to N2,N2-dimethylguanosine tRNA methyltransferase-like, transcript variant 1 (LOC608468), mRNA Length = 2629 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2059 tacattgcacaaggaaaga 2077
>gb|AF163261.1| Homo sapiens MSTP070 (MST070) mRNA, complete cds Length = 1989 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 545 tacattgcacaaggaaaga 563
>gb|BC045535.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone MGC:57134 IMAGE:5296208), complete cds Length = 3448 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2031 tacattgcacaaggaaaga 2049
>gb|BC053961.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone IMAGE:5296029) Length = 3448 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2031 tacattgcacaaggaaaga 2049
>emb|CR860774.1| Pongo pygmaeus mRNA; cDNA DKFZp459K016 (from clone DKFZp459K016) Length = 4152 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2068 tacattgcacaaggaaaga 2086
>dbj|AK131460.1| Homo sapiens cDNA FLJ16620 fis, clone TESTI4014801 Length = 5100 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2789 tacattgcacaaggaaaga 2807
>dbj|AK074993.1| Homo sapiens cDNA FLJ90512 fis, clone NT2RP3004345, weakly similar to N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE PRECURSOR (EC 2.1.1.32) Length = 3396 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2054 tacattgcacaaggaaaga 2072
>dbj|AK074936.1| Homo sapiens cDNA FLJ90455 fis, clone NT2RP3001592, weakly similar to N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE PRECURSOR (EC 2.1.1.32) Length = 2604 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2031 tacattgcacaaggaaaga 2049
>dbj|AB169258.1| Macaca fascicularis testis cDNA, clone: QtsA-18292, similar to human chromosome 1 open reading frame 25 (C1orf25), mRNA, RefSeq: NM_030934.3 Length = 2547 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 1944 tacattgcacaaggaaaga 1962
>gb|AF288399.1|AF288399 Homo sapiens C1orf25 mRNA, complete cds Length = 4326 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2004 tacattgcacaaggaaaga 2022
>dbj|AK098359.1| Homo sapiens cDNA FLJ25493 fis, clone CBR01469 Length = 3465 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2049 tacattgcacaaggaaaga 2067
>gb|BC035430.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone IMAGE:4508960) Length = 2927 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tacattgcacaaggaaaga 82 ||||||||||||||||||| Sbjct: 2034 tacattgcacaaggaaaga 2052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 762,146 Number of Sequences: 3902068 Number of extensions: 762146 Number of successful extensions: 48609 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48590 Number of HSP's gapped (non-prelim): 19 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)