ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_382712.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 40 1.6
2emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-4... 40 1.6
3emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 1.6
4ref|XM_514058.1| PREDICTED: Pan troglodytes LOC457582 (LOC457582... 38 6.2
5gb|BC026883.1| Homo sapiens chromosome 1 open reading frame 25, ... 38 6.2
6ref|NM_030934.3| Homo sapiens chromosome 1 open reading frame 25... 38 6.2
7ref|XM_854881.1| PREDICTED: Canis familiaris similar to N2,N2-di... 38 6.2
8ref|XM_844760.1| PREDICTED: Canis familiaris similar to N2,N2-di... 38 6.2
9gb|AF163261.1| Homo sapiens MSTP070 (MST070) mRNA, complete cds 38 6.2
10gb|BC045535.1| Homo sapiens chromosome 1 open reading frame 25, ... 38 6.2
11gb|BC053961.1| Homo sapiens chromosome 1 open reading frame 25, ... 38 6.2
12emb|CR860774.1| Pongo pygmaeus mRNA; cDNA DKFZp459K016 (from clo... 38 6.2
13dbj|AK131460.1| Homo sapiens cDNA FLJ16620 fis, clone TESTI4014801 38 6.2
14dbj|AK074993.1| Homo sapiens cDNA FLJ90512 fis, clone NT2RP30043... 38 6.2
15dbj|AK074936.1| Homo sapiens cDNA FLJ90455 fis, clone NT2RP30015... 38 6.2
16dbj|AB169258.1| Macaca fascicularis testis cDNA, clone: QtsA-182... 38 6.2
17gb|AF288399.1|AF288399 Homo sapiens C1orf25 mRNA, complete cds 38 6.2
18dbj|AK098359.1| Homo sapiens cDNA FLJ25493 fis, clone CBR01469 38 6.2
19gb|BC035430.1| Homo sapiens chromosome 1 open reading frame 25, ... 38 6.2

>ref|XM_382712.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
            (FG02536.1) partial mRNA
          Length = 7113

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  agtaccttgactacaccact 124
            ||||||||||||||||||||
Sbjct: 5150 agtaccttgactacaccact 5169



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>emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173260

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ctagagtaccttgactacac 120
             ||||||||||||||||||||
Sbjct: 40036 ctagagtaccttgactacac 40055



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>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctagagtaccttgactacac 120
              ||||||||||||||||||||
Sbjct: 165748 ctagagtaccttgactacac 165767



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>ref|XM_514058.1| PREDICTED: Pan troglodytes LOC457582 (LOC457582), mRNA
          Length = 1920

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 1528 tacattgcacaaggaaaga 1546



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>gb|BC026883.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone
            MGC:25112 IMAGE:4508495), complete cds
          Length = 2928

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2035 tacattgcacaaggaaaga 2053



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>ref|NM_030934.3| Homo sapiens chromosome 1 open reading frame 25 (C1orf25), mRNA
          Length = 4359

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2049 tacattgcacaaggaaaga 2067



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>ref|XM_854881.1| PREDICTED: Canis familiaris similar to N2,N2-dimethylguanosine tRNA
            methyltransferase-like, transcript variant 2 (LOC608468),
            mRNA
          Length = 2617

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2047 tacattgcacaaggaaaga 2065



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>ref|XM_844760.1| PREDICTED: Canis familiaris similar to N2,N2-dimethylguanosine tRNA
            methyltransferase-like, transcript variant 1 (LOC608468),
            mRNA
          Length = 2629

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2059 tacattgcacaaggaaaga 2077



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>gb|AF163261.1| Homo sapiens MSTP070 (MST070) mRNA, complete cds
          Length = 1989

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 64  tacattgcacaaggaaaga 82
           |||||||||||||||||||
Sbjct: 545 tacattgcacaaggaaaga 563



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>gb|BC045535.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone
            MGC:57134 IMAGE:5296208), complete cds
          Length = 3448

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2031 tacattgcacaaggaaaga 2049



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>gb|BC053961.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone
            IMAGE:5296029)
          Length = 3448

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2031 tacattgcacaaggaaaga 2049



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>emb|CR860774.1| Pongo pygmaeus mRNA; cDNA DKFZp459K016 (from clone DKFZp459K016)
          Length = 4152

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2068 tacattgcacaaggaaaga 2086



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>dbj|AK131460.1| Homo sapiens cDNA FLJ16620 fis, clone TESTI4014801
          Length = 5100

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2789 tacattgcacaaggaaaga 2807



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>dbj|AK074993.1| Homo sapiens cDNA FLJ90512 fis, clone NT2RP3004345, weakly similar to
            N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE PRECURSOR
            (EC 2.1.1.32)
          Length = 3396

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2054 tacattgcacaaggaaaga 2072



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>dbj|AK074936.1| Homo sapiens cDNA FLJ90455 fis, clone NT2RP3001592, weakly similar to
            N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE PRECURSOR
            (EC 2.1.1.32)
          Length = 2604

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2031 tacattgcacaaggaaaga 2049



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>dbj|AB169258.1| Macaca fascicularis testis cDNA, clone: QtsA-18292, similar to human
            chromosome 1 open reading frame 25 (C1orf25), mRNA,
            RefSeq: NM_030934.3
          Length = 2547

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 1944 tacattgcacaaggaaaga 1962



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>gb|AF288399.1|AF288399 Homo sapiens C1orf25 mRNA, complete cds
          Length = 4326

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2004 tacattgcacaaggaaaga 2022



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>dbj|AK098359.1| Homo sapiens cDNA FLJ25493 fis, clone CBR01469
          Length = 3465

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2049 tacattgcacaaggaaaga 2067



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>gb|BC035430.1| Homo sapiens chromosome 1 open reading frame 25, mRNA (cDNA clone
            IMAGE:4508960)
          Length = 2927

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   tacattgcacaaggaaaga 82
            |||||||||||||||||||
Sbjct: 2034 tacattgcacaaggaaaga 2052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 762,146
Number of Sequences: 3902068
Number of extensions: 762146
Number of successful extensions: 48609
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48590
Number of HSP's gapped (non-prelim): 19
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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