ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOSA_RHIME (Q07607) Protein mosA (EC 4.1.-.-) 27 8.9
2EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associate... 27 8.9

>MOSA_RHIME (Q07607) Protein mosA (EC 4.1.-.-)|
          Length = 333

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 401 QYQAMKSDFAASLYKDDHAAPSHKLL---KRPKHSKC*LKRLWYMRTFVKL 258
           Q   +  DFAA+L   D   P H+ L     P  +K  L+RL  MR  ++L
Sbjct: 218 QQACLNGDFAAALKLQDRLMPLHRALFLETNPAGAKYALQRLGRMRGDLRL 268



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>EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associated protein|
           p162) (Zinc finger FYVE domain-containing protein 2)
          Length = 1411

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -1

Query: 333 QAAEKAKTQQVLTEAPLVHAYIR*TWIQLKISLIDANLKKSSLLSARLGLELDIAEELRR 154
           +A  + K Q+ L+   L+    +   +QLK+S ++  LK+    S  L  +LD  ++  +
Sbjct: 432 EAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQ 491

Query: 153 RKQAAEE 133
            +QA ++
Sbjct: 492 EQQALQQ 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,179,472
Number of Sequences: 219361
Number of extensions: 696542
Number of successful extensions: 1410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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