ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06d01 |
|---|---|
| Clone Library Name | barley_pub |
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -1 Query: 387 IGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 289 + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 66 LASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>CLN3_MACFA (Q60HH0) Protein CLN3 (Battenin)| Length = 438 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +2 Query: 251 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 364 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>CLN3_HUMAN (Q13286) Protein CLN3 (Battenin) (Batten disease protein)| Length = 438 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +2 Query: 251 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 364 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>CLN3_MOUSE (Q61124) Protein CLN3 (Battenin)| Length = 438 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +2 Query: 251 FYPLATISWILSLTSGSSDL-TASFIATSLGPLSPNDNLTRTFTPPI 388 FYP A ISW S T G+ L + S++ + LSP L P+ Sbjct: 175 FYPSAVISWWSSGTGGAGLLGSLSYLGLTQAGLSPQHTLLSMLGIPV 221
>SYS_STAES (Q8CU95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -1 Query: 339 PKEVAMKLAVRSDDPEVSDKIHEI 268 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>SYS_STAEQ (Q5HK07) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -1 Query: 339 PKEVAMKLAVRSDDPEVSDKIHEI 268 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>CLN3_CANFA (Q29611) Protein CLN3 (Battenin)| Length = 438 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +2 Query: 251 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 364 FYP A ISW S T G+ + A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLMGALSYLGLTQAGLSPQHTL 213
>SLAF1_HUMAN (Q13291) Signaling lymphocytic activation molecule precursor| (IPO-3) (CD150 antigen) (CDw150) Length = 335 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 245 HPFYPLATISWILSLTSGSSDLTASFIATSLGPLSPNDNLTRTFTP 382 HP P A S +LSLT G +I T P+S N ++TF+P Sbjct: 183 HPLNP-ANSSHLLSLTLGPQHADNIYICTVSNPISNN---SQTFSP 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,563,341 Number of Sequences: 219361 Number of extensions: 882806 Number of successful extensions: 2087 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2087 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
