ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SNX19_HUMAN (Q92543) Sorting nexin-19 29 3.4

>SNX19_HUMAN (Q92543) Sorting nexin-19|
          Length = 992

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/62 (25%), Positives = 22/62 (35%)
 Frame = -3

Query: 211 ENGRAWVTFCSAALNHPISHIPGCLCTYKLIIARALQLGHKYSNRLARDSPAYILAELYL 32
           E    W  +C A   HP  H P    TY   +   L  G      L   +  +++ EL  
Sbjct: 184 EPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELIT 243

Query: 31  VN 26
            N
Sbjct: 244 CN 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,400,268
Number of Sequences: 219361
Number of extensions: 902744
Number of successful extensions: 1495
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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