ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch bran... 434 e-119
2gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan 6-alph... 147 2e-32
3gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme... 111 1e-21
4gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2... 109 5e-21
5emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II 105 8e-20
6gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme... 105 8e-20
7gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete... 42 1.0
8ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA 42 1.0
9gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA 42 1.0
10gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, c... 42 1.0
11gb|AC068580.23| Homo sapiens chromosome 11, clone RP11-295K3, co... 42 1.0
12gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61... 42 1.0
13gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205... 42 1.0
14emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chr... 42 1.0
15gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosom... 40 4.1
16gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... 40 4.1
17gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence 40 4.1
18gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, compl... 40 4.1
19emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on ch... 40 4.1
20gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome ... 40 4.1
21emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 i... 40 4.1
22dbj|AK088955.1| Mus musculus 2 days neonate thymus thymic cells ... 40 4.1
23gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, comple... 40 4.1
24dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 4.1
25emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in... 40 4.1
26emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on ch... 40 4.1 
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
            mRNA, nuclear gene encoding plastid protein, complete cds
          Length = 2554

 Score =  434 bits (219), Expect = e-119
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgtccaagttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatg 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 tgtccaagttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatg 2469

                                                                        
Query: 153  tgagagataggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttct 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 tgagagataggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttct 2409

                                                                        
Query: 213  ttcgcaggtcacttgaaaacgagggctcgccagcaagctacctatccatctgatcctcct 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 ttcgcaggtcacttgaaaacgagggctcgccagcaagctacctatccatctgatcctcct 2349

                                                   
Query: 273  agcatctggggaagaggcacgatcccctcccaatcacgg 311
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 agcatctggggaagaggcacgatcccctcccaatcacgg 2310
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>gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan
            6-alpha-D-(1,4-alpha-D-glucanotransferase mRNA, complete
            cds
          Length = 2853

 Score =  147 bits (74), Expect = 2e-32
 Identities = 138/156 (88%), Gaps = 10/156 (6%)
 Strand = Plus / Minus

                                                                        
Query: 66   tcacgggctaacctattagaatatttat--gtccaagttgaagcgcacgggcaattatta 123
            ||||||| ||||||||||||||||||||  || || ||||||||||||||||||||||||
Sbjct: 2829 tcacgggataacctattagaatatttatatgttcatgttgaagcgcacgggcaattatta 2770

                                                                        
Query: 124  gtttatatgtacataaacaaccgggaatgtgagagat---aggatggttcagtgcagcac 180
            | ||||||||||| |||||||||||||||||  ||||   |||| |||||||||||||||
Sbjct: 2769 g-ttatatgtacaaaaacaaccgggaatgtgcaagataggaggagggttcagtgcagcac 2711

                                                
Query: 181  tacaaaatgtcacccaggcccgtccattttctttcg 216
             |||||    ||||||||||||||||||||||||||
Sbjct: 2710 aacaaa----cacccaggcccgtccattttctttcg 2679



 Score =  105 bits (53), Expect = 8e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 232  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 291
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2680 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2621

                         
Query: 292  cgatcccctccca 304
            |||||||||||||
Sbjct: 2620 cgatcccctccca 2608
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>gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme IIa gene, complete cds
          Length = 11475

 Score =  111 bits (56), Expect = 1e-21
 Identities = 102/115 (88%), Gaps = 8/115 (6%)
 Strand = Plus / Minus

                                                                         
Query: 105   agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagat---a 161
             |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||   |
Sbjct: 11461 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 11403

                                                                    
Query: 162   ggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 216
             ||| ||||||||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 11402 ggagggttcagtgcagcacaacaaa----cacccaggcccgtccattttctttcg 11352



 Score =  105 bits (53), Expect = 8e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                         
Query: 232   cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 291
             |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 11353 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 11294

                          
Query: 292   cgatcccctccca 304
             |||||||||||||
Sbjct: 11293 cgatcccctccca 11281
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>gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2) mRNA, complete cds
          Length = 2970

 Score =  109 bits (55), Expect = 5e-21
 Identities = 145/169 (85%), Gaps = 12/169 (7%)
 Strand = Plus / Minus

                                                                        
Query: 54   taggcaggtgaatcacgggctaacctatta---gaatatttat--gtccaagttgaagcg 108
            ||||||||| ||||||||| ||||||||||   ||||||||||  || || ||||| |||
Sbjct: 2959 taggcaggtaaatcacgggataacctattattagaatatttatatgttcacgttga-gcg 2901

                                                                        
Query: 109  cacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagataggatg-g 167
            |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||| | |
Sbjct: 2900 cacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagataggaggag 2842

                                                             
Query: 168  ttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 216
               |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2841 ggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2797



 Score =  105 bits (53), Expect = 8e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 232  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 291
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2798 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2739

                         
Query: 292  cgatcccctccca 304
            |||||||||||||
Sbjct: 2738 cgatcccctccca 2726
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>emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II
          Length = 2970

 Score =  105 bits (53), Expect = 8e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 232  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 291
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2800 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2741

                         
Query: 292  cgatcccctccca 304
            |||||||||||||
Sbjct: 2740 cgatcccctccca 2728



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 99/113 (87%), Gaps = 6/113 (5%)
 Strand = Plus / Minus

                                                                        
Query: 105  agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 164
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2906 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2848

                                                                 
Query: 165  tg-gttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 216
             | |   |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2847 ggagggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2799
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>gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme IIa variant mRNA, complete
            cds
          Length = 2726

 Score =  105 bits (53), Expect = 8e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 232  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 291
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2608 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2549

                         
Query: 292  cgatcccctccca 304
            |||||||||||||
Sbjct: 2548 cgatcccctccca 2536



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 99/113 (87%), Gaps = 6/113 (5%)
 Strand = Plus / Minus

                                                                        
Query: 105  agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 164
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2714 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2656

                                                                 
Query: 165  tg-gttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 216
             | |   |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2655 ggagggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2607
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>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence
          Length = 172393

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   ttattagtttatatgtacata 138
             |||||||||||||||||||||
Sbjct: 86061 ttattagtttatatgtacata 86041
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>ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA
          Length = 2320

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 118 ttattagtttatatgtacata 138
           |||||||||||||||||||||
Sbjct: 52  ttattagtttatatgtacata 32
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>gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA
          Length = 2311

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 118 ttattagtttatatgtacata 138
           |||||||||||||||||||||
Sbjct: 27  ttattagtttatatgtacata 7
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>gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, complete sequence
          Length = 155537

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     agttctgctaaaatataggca 59
              |||||||||||||||||||||
Sbjct: 120783 agttctgctaaaatataggca 120763
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>gb|AC068580.23| Homo sapiens chromosome 11, clone RP11-295K3, complete sequence
          Length = 120298

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     agttctgctaaaatataggca 59
              |||||||||||||||||||||
Sbjct: 101217 agttctgctaaaatataggca 101237
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>gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61 of 73 of the
            complete sequence
          Length = 305143

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  ttattagtttatatgtacata 138
            |||||||||||||||||||||
Sbjct: 2700 ttattagtttatatgtacata 2720
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>gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205)) DNA sequence, complete
             sequence
          Length = 80993

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   ttattagtttatatgtacata 138
             |||||||||||||||||||||
Sbjct: 49971 ttattagtttatatgtacata 49951
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>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete
             sequence
          Length = 220669

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    tattcaccaaataaagttctg 45
             |||||||||||||||||||||
Sbjct: 48457 tattcaccaaataaagttctg 48477
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>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence
          Length = 198036

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    agtattcaccaaataaagtt 42
             ||||||||||||||||||||
Sbjct: 59413 agtattcaccaaataaagtt 59432
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>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete
            sequence
          Length = 190553

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  gtttatatgtacataaacaa 143
            ||||||||||||||||||||
Sbjct: 6326 gtttatatgtacataaacaa 6345
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>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence
          Length = 160031

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gaatgtgagagataggatgg 167
              ||||||||||||||||||||
Sbjct: 102898 gaatgtgagagataggatgg 102917
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>gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, complete sequence
          Length = 184557

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    aatatttatgtccaagttga 104
             ||||||||||||||||||||
Sbjct: 62839 aatatttatgtccaagttga 62820
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>emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on chromosome 13q22.3-31.3,
             complete sequence
          Length = 147978

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaataaagttctgctaaaat 52
             ||||||||||||||||||||
Sbjct: 25273 aaataaagttctgctaaaat 25254
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>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence
          Length = 265770

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   gtttatatgtacataaacaa 143
             ||||||||||||||||||||
Sbjct: 60879 gtttatatgtacataaacaa 60860
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>emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 in linkage group 3,
             complete sequence
          Length = 103014

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    attagaatatttatgtccaagttg 103
             |||| |||||||||||||||||||
Sbjct: 44261 attaaaatatttatgtccaagttg 44238
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>dbj|AK088955.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430033K04
            product:unclassifiable, full insert sequence
          Length = 3339

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   aaataaagttctgctaaaat 52
            ||||||||||||||||||||
Sbjct: 3124 aaataaagttctgctaaaat 3143
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>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     agttctgctaaaatataggc 58
              ||||||||||||||||||||
Sbjct: 118238 agttctgctaaaatataggc 118219
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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     tagaatatttatgtccaagttgaa 105
              |||||||||| |||||||||||||
Sbjct: 266924 tagaatatttttgtccaagttgaa 266947
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>emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in linkage group 20,
             complete sequence
          Length = 42367

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   tcagtgcagcactacaaaat 188
             ||||||||||||||||||||
Sbjct: 28172 tcagtgcagcactacaaaat 28191
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>emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on chromosome 2, complete
              sequence
          Length = 216706

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aaataaagttctgctaaaat 52
              ||||||||||||||||||||
Sbjct: 130186 aaataaagttctgctaaaat 130205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,991,786
Number of Sequences: 3902068
Number of extensions: 2991786
Number of successful extensions: 53102
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53046
Number of HSP's gapped (non-prelim): 45
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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