ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FAL1_CRYNE (Q5KJJ2) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-) 28 6.6
2MATK_APOAN (O09410) Maturase K (Intron maturase) 28 8.6

>FAL1_CRYNE (Q5KJJ2) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-)|
          Length = 396

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 76  LAVCFEIIVMHVNDYIIVTCNACI 5
           LAV  + +V+ + DY+ V+C+ACI
Sbjct: 103 LAVQIQTVVLALGDYMNVSCHACI 126



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>MATK_APOAN (O09410) Maturase K (Intron maturase)|
          Length = 505

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +2

Query: 23  YNNIVVNMHDNNFKAYSQIRRTAYILQNMSHEFEIIFYMQLMS*SPARILRTYVKNIYIL 202
           + + +VN    NF  +   RR AYI Q  ++  + + Y+ ++  +P  +    +KN +++
Sbjct: 297 WKSYLVNFWQCNFDLWVHSRR-AYIKQVYNYSLDFMGYLSIVRQTPLTVRSQMLKNAFLI 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,720,322
Number of Sequences: 219361
Number of extensions: 429412
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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