>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                        
Query: 10   aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 69
            |||||||||||||||||||| | || ||| |||||||||||||||||||| || ||||||
Sbjct: 1291 aaccttggcatactgatcaccagtgcaaccacagaaactccaacaataagcggaaaaact 1232

                              
Query: 70   ggggctggggtcagttcc 87
            || |||||||||||||||
Sbjct: 1231 ggtgctggggtcagttcc 1214

>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                       
Query: 10  aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 69
           |||||||||||||||||||| | || ||| |||||||||||||||||||| || ||||||
Sbjct: 477 aaccttggcatactgatcaccagtgcaaccacagaaactccaacaataagcggaaaaact 418

                             
Query: 70  ggggctggggtcagttcc 87
           || |||||||||||||||
Sbjct: 417 ggtgctggggtcagttcc 400

>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence
          Length = 187416

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     taacaacagaaactccaacaa 55
              |||||||||||||||||||||
Sbjct: 153736 taacaacagaaactccaacaa 153756

>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     taacaacagaaactccaacaa 55
              |||||||||||||||||||||
Sbjct: 170731 taacaacagaaactccaacaa 170711

>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein
            (DDB0220518), partial mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   actgtaacaacagaaactccaaca 54
            ||||||||||||| ||||||||||
Sbjct: 8839 actgtaacaacagtaactccaaca 8862

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                            
Query: 10       aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 69
                ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168

                        
Query: 70       ggggctgg 77
                ||||||||
Sbjct: 11024169 ggggctgg 11024176

>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                         
Query: 10    aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 69
             ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050

                     
Query: 70    ggggctgg 77
             ||||||||
Sbjct: 53051 ggggctgg 53058

>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                          
Query: 10     aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 69
              ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010

                      
Query: 70     ggggctgg 77
              ||||||||
Sbjct: 127011 ggggctgg 127018

>gb|AY660895.1| Fusobacterium canifelinum strain ATCC BAA-690 DNA gyrase subunit B
           (gyrB) gene, partial cds
          Length = 1599

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 35  taacaacagaaactccaac 53
           |||||||||||||||||||
Sbjct: 406 taacaacagaaactccaac 388

>gb|AY660894.1| Fusobacterium canifelinum strain ATCC BAA-689 DNA gyrase subunit B
           (gyrB) gene, partial cds
          Length = 1599

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 35  taacaacagaaactccaac 53
           |||||||||||||||||||
Sbjct: 406 taacaacagaaactccaac 388

>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 43   gaaactccaacaataagaggtaaaactggggctgg 77
            |||||||| ||||||||||| || || ||||||||
Sbjct: 3446 gaaactccgacaataagaggaaatacaggggctgg 3412

>gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, complete sequence
          Length = 169078

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 62    gtaaaactggggctggggtcagt 84
             |||||| ||||||||||||||||
Sbjct: 65033 gtaaaaatggggctggggtcagt 65011

>gb|AC125328.4| Mus musculus BAC clone RP23-181J14 from chromosome 15, complete sequence
          Length = 199674

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     acaataagaggtaaaactg 70
              |||||||||||||||||||
Sbjct: 117352 acaataagaggtaaaactg 117370

>gb|AC118249.11| Mus musculus chromosome 19, clone RP23-397G23, complete sequence
          Length = 224129

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    gtaacaacagaaactccaacaat 56
             |||||||||| ||||||||||||
Sbjct: 22845 gtaacaacagtaactccaacaat 22867

>gb|AY342040.1| Homo sapiens tumor necrosis factor receptor superfamily, member 1B
             (TNFRSF1B) gene, complete cds
          Length = 45812

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    aaactggggctggggtcag 83
             |||||||||||||||||||
Sbjct: 10402 aaactggggctggggtcag 10384

>gb|AC132569.3| Mus musculus BAC clone RP24-486E21 from chromosome 8, complete sequence
          Length = 172340

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     gactgtaacaacagaaact 48
              |||||||||||||||||||
Sbjct: 133801 gactgtaacaacagaaact 133819

>gb|AC124380.4| Mus musculus BAC clone RP24-404N12 from chromosome 8, complete sequence
          Length = 149620

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    gactgtaacaacagaaact 48
             |||||||||||||||||||
Sbjct: 10580 gactgtaacaacagaaact 10562

>gb|AC122237.4| Mus musculus BAC clone RP23-143A15 from 8, complete sequence
          Length = 183867

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     gactgtaacaacagaaact 48
              |||||||||||||||||||
Sbjct: 156785 gactgtaacaacagaaact 156767

>emb|AL357835.11| Human DNA sequence from clone RP11-426M1 on chromosome 1 Contains the
              TNFRSF8 gene for tumor necrosis factor receptor superfamily
              member 8, a ribosomal protein L23a (RPL23A) pseudogene, the
              5' end of the TNFRSF1B gene for tumor necrosis factor
              receptor superfamily member 1B and three CpG islands,
              complete sequence
          Length = 151498

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     aaactggggctggggtcag 83
              |||||||||||||||||||
Sbjct: 129036 aaactggggctggggtcag 129018

>gb|AC069079.11| Homo sapiens chromosome 10 clone RP11-539E19, complete sequence
          Length = 216006

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 58    agaggtaaaactggggctggggt 80
             ||||||||| |||||||||||||
Sbjct: 51554 agaggtaaagctggggctggggt 51532

>gb|AC118653.6| Homo sapiens chromosome 17, clone CTD-2319F6, complete sequence
          Length = 112268

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 62   gtaaaactggggctggggt 80
            |||||||||||||||||||
Sbjct: 7363 gtaaaactggggctggggt 7345

>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     taacaacagaaactccaac 53
              |||||||||||||||||||
Sbjct: 637943 taacaacagaaactccaac 637961

>gb|AY264804.1| Homo sapiens tumor necrosis factor receptor superfamily, member 1B
             (TNFRSF1B) gene, complete cds
          Length = 45584

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    aaactggggctggggtcag 83
             |||||||||||||||||||
Sbjct: 10514 aaactggggctggggtcag 10496

>gb|AC006448.14|AC006448 Homo sapiens chromosome 17, clone RP11-423M11, complete sequence
          Length = 127587

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    gtaaaactggggctggggt 80
             |||||||||||||||||||
Sbjct: 86178 gtaaaactggggctggggt 86160

>gb|AC092614.2| Homo sapiens BAC clone RP11-192M8 from 2, complete sequence
          Length = 106992

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     acagaaactccaacaataa 58
              |||||||||||||||||||
Sbjct: 102072 acagaaactccaacaataa 102054

>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 43   gaaactccaacaataagaggtaaaactggggctgg 77
            |||||||| ||||||||||| || || ||||||||
Sbjct: 1105 gaaactccgacaataagaggaaatacaggggctgg 1071

>emb|AJ969201.2| Helicobacter pullorum partial gyrB gene for gyrase B, strain CCUG
          33842
          Length = 1098

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 35 taacaacagaaactccaac 53
          |||||||||||||||||||
Sbjct: 31 taacaacagaaactccaac 13

>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence
          Length = 151729

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 36    aacaacagaaactccaacaataa 58
             ||||||||||||||||| |||||
Sbjct: 21799 aacaacagaaactccaaaaataa 21821

>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   acaataagaggtaaaactg 70
            |||||||||||||||||||
Sbjct: 8305 acaataagaggtaaaactg 8287

>emb|AJ310803.1|LCR310803 Lunularia cruciata mitochondrial partial nad4 gene for NADH
            dehydrogenase subunit 4, exons 1-2
          Length = 2152

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 45   aactccaacaataagaggtaaaa 67
            |||||||||||||| ||||||||
Sbjct: 2089 aactccaacaataaaaggtaaaa 2067

>emb|AJ310801.1|CCO310801 Corsinia coriandrina mitochondrial partial nad4 gene for NADH
            dehydrogenase subunit 4, exons 1-2
          Length = 2151

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 45   aactccaacaataagaggtaaaa 67
            |||||||||||||| ||||||||
Sbjct: 2088 aactccaacaataaaaggtaaaa 2066


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 758,866
Number of Sequences: 3902068
Number of extensions: 758866
Number of successful extensions: 56495
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56422
Number of HSP's gapped (non-prelim): 70
length of query: 87
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 66
effective length of database: 17,151,101,840
effective search space: 1131972721440
effective search space used: 1131972721440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)