ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06c02 |
|---|---|
| Clone Library Name | barley_pub |
>CXCR3_BOVIN (Q5MD61) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 366 Score = 31.2 bits (69), Expect = 0.67 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Frame = -3 Query: 327 ARCFSPALVAPFPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 157 AR + LV+ MRL+ V VA LC+T V D +G LA R Sbjct: 234 ARILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALARNCGRESS 293 Query: 156 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFVSRIK 28 D SG + ++ CC +PL + + V R R++V ++ Sbjct: 294 VDIAKSVTSG----MGYMHCCLNPLLYAFVGVKFRERMWVLLVR 333
>CXCR3_CAPHI (Q867B2) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 366 Score = 30.4 bits (67), Expect = 1.1 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = -3 Query: 327 ARCFSPALVAPFPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 157 AR + LV+ MRL+ V VA LC+T V D +G LA R Sbjct: 234 ARILTVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALARNCGRESR 293 Query: 156 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFV 40 D SG + ++ CC +PL + + V R R++V Sbjct: 294 VDVAKSVTSG----MGYMHCCLNPLLYAFVGVKFRERMWV 329
>SPL7_ARATH (Q8S9G8) Squamosa promoter-binding-like protein 7| Length = 801 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -3 Query: 273 MRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYL 160 M LI T AV CF C ++HP++V LA ++ L Sbjct: 764 MFLIATFAV----CFAVCAVLYHPNKVTQLAVAIRMRL 797
>CXCR3_CANFA (Q5KSK8) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 365 Score = 30.0 bits (66), Expect = 1.5 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = -3 Query: 327 ARCFSPALVAPFPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 157 AR + LV+ RMRL+ V VA LC+T V D +G L R Sbjct: 236 ARILAVLLVSRGQRRQRRMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALDRNCGRESR 295 Query: 156 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFV 40 D SG L ++ CC +PL + + V R R+++ Sbjct: 296 VDVAKSVTSG----LGYMHCCLNPLLYAFVGVKFRERMWM 331
>CXCR3_RAT (Q9JII9) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 367 Score = 29.6 bits (65), Expect = 1.9 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Frame = -3 Query: 273 MRLITTVAVAAVLCFTACVAVFHPD---RVGVLAAPVKRYLFSDCPPWNHSGC*IRLTFL 103 MRL+ V VA +C+T V D VGVLA R D SG + ++ Sbjct: 253 MRLVVVVVVAFAVCWTPYHLVVLVDILMDVGVLARNCGRESHVDVAKSVTSG----MGYM 308 Query: 102 TCCCSPLCHVYTVV 61 CC +PL + + V Sbjct: 309 HCCLNPLLYAFVGV 322
>CDA1_SCHPO (O13842) Chitin deacetylase 1 (EC 3.5.1.41)| Length = 320 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 85 GRATTSQES*SNLTSTMVPWWAVAKQVPLYWSCKHPY 195 GR Q+ ++TS W A +Q+ WS KHPY Sbjct: 282 GRFRGLQKLMEHITSKEGVWVATREQIAQAWSAKHPY 318
>UREE_RHILO (Q98CZ2) Urease accessory protein ureE| Length = 196 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 193 YSIWVEHGNTGRETQYSSHCHSRDESHSHS 282 YS +HG+ + +H H+ ESHSHS Sbjct: 153 YSGGHDHGHAHAHSHAEAHSHAHGESHSHS 182
>CXCR3_HUMAN (P49682) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) (CKR-L2) (CD183 antigen) (G protein-coupled receptor 9) Length = 368 Score = 28.9 bits (63), Expect = 3.3 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -3 Query: 273 MRLITTVAVAAVLCFTACVAVFHPD---RVGVLAAPVKRYLFSDCPPWNHSGC*IRLTFL 103 MRL+ V VA LC+T V D +G LA R D SG L ++ Sbjct: 254 MRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARNCGRESRVDVAKSVTSG----LGYM 309 Query: 102 TCCCSPLCHVYTVVS-RHRLFV 40 CC +PL + + V R R+++ Sbjct: 310 HCCLNPLLYAFVGVKFRERMWM 331
>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA| cleavage complex II protein Pcf11) (Fragment) Length = 1654 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +1 Query: 226 RETQYSSHCHSRDESHSHSTTWKRSNQGGTKTS 324 R + S H H +D+SH NQ TKTS Sbjct: 397 RLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTS 429
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 47 NLCLDTTVYTWHRGEQQQVKKVNLI*HPLWFHGG--QSLNKYLFTGAASTPTLSGWNTA 217 +L +++T+ T G+ ++ I +W G S+N Y+ T STPTL NT+ Sbjct: 301 DLSVESTIQTSDIGKSFLLRDNTEINEKIWGTSGIPSSINGYMSTPQPSTPTLEWGNTS 359
>LAC1_THACU (P56193) Laccase 1 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 576 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +1 Query: 145 WAVAKQVPLYWSCKHPYSIWVEHGNTG---RETQYSSHCHSR 261 W+V++ + YW+ KH + + G+ G R + S H HSR Sbjct: 320 WSVSEAIIKYWNHKHKHGRGLLSGHGGLKARMIEGSHHLHSR 361
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 205 VEHGNTGRETQYSSHCHSRDESHSHSTTWKRSNQGGTKTSC 327 V G+TG++T C HSH T +R++ G +C Sbjct: 256 VPDGDTGKKTYKCEQCGKGFSWHSHLVTHRRTHTGEKPYTC 296
>TESB_HAEIN (P44498) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII)| Length = 286 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 53 CLDTTVYTWHRGEQQQVKKVNLI*HPLWFHGGQSLNKYLFTGAASTPTLSG 205 C+ T ++ +G Q+ KV I H +WFH LN + S G Sbjct: 207 CILTALHPHEKGFLQKGMKVATIDHSIWFHRPFDLNHWHLHAIESNNAFGG 257
>MGA2_YEAST (P40578) Protein MGA2| Length = 1113 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 157 KQVPLYWSCKHPYSIWVEHGNTGRETQYSSHCHSRD 264 K + + +CK YS+ +G T RE ++H HS++ Sbjct: 767 KIIKMLLNCKVNYSLRSHNGLTAREVFIANHIHSKE 802
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 28.1 bits (61), Expect = 5.7 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 291 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 130 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 755 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 813 Query: 129 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 22 GC + T TC CS L + +++ ++ RI L Sbjct: 814 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 857
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +2 Query: 92 QQQVKKVNLI*HPLWFHGGQSLNKYLFTGAASTPTLSGWNTATQAVKHNTAATATVVMSR 271 Q ++ +N + P F+ Q + A+S+PT + +TA V N A A S Sbjct: 63 QTRLPPINCLAEP--FNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSY 120 Query: 272 ILIAPPGKGAT-KAGLKHLA 328 + PP T +A KH A Sbjct: 121 VYSVPPTNSTTSQASAKHSA 140
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 28.1 bits (61), Expect = 5.7 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 291 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 130 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 755 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 813 Query: 129 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 22 GC + T TC CS L + +++ ++ RI L Sbjct: 814 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 857
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 28.1 bits (61), Expect = 5.7 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 291 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 130 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 690 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 748 Query: 129 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 22 GC + T TC CS L + +++ ++ RI L Sbjct: 749 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 792
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 28.1 bits (61), Expect = 5.7 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 16/106 (15%) Frame = -3 Query: 291 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPV--KRYLFSDCPPWNHS---- 130 PGG L+ V A VF D V A + K + ++C WN+S Sbjct: 753 PGGPGGASLVVNSQVIAASINKESSRVFLMDPVIFTVAHLEDKNHFNANCSFWNYSERSM 812 Query: 129 -------GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 22 GC + T TC CS L + +++ ++ RI L Sbjct: 813 LGYWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 858
>UVRC_VIBVY (Q7MM39) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 610 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 253 HSRDESHSHSTTWKRSNQGGT-KTSCI 330 H RDESH+H+ R+ +G T KTS + Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSAL 558
>UVRC_VIBVU (Q8D8C7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 610 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 253 HSRDESHSHSTTWKRSNQGGT-KTSCI 330 H RDESH+H+ R+ +G T KTS + Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSAL 558
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -2 Query: 256 CGSGCCI---VFHGLCCRVP--PR*SRGACSSSKEV 164 CGSGCC+ +CC VP S G+C SK V Sbjct: 31 CGSGCCVPVCCCKPVCCCVPACSCSSCGSCGGSKGV 66
>PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)| Length = 303 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 309 ALVAPFPGGAMRMRLITTVAVAAVLCFTACV--AVFHPDRVGVL 184 A +AP PG +MR RL+ V AV A AV V VL Sbjct: 26 AALAPSPGSSMRRRLLLGVGTPAVAALAAAAPPAVLQDGAVTVL 69
>PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precursor (EC| 2.7.-.-) Length = 292 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 309 ALVAPFPGGAMRMRLITTVAVAAVLCFTACV--AVFHPDRVGVL 184 A +AP PG +MR RL+ V AV A AV V VL Sbjct: 26 AALAPSPGSSMRRRLLLGVGTPAVAALAAAAPPAVLQDGAVTVL 69
>KE4_PONPY (Q5RFD5) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +1 Query: 187 HPYSIWVEHGNTGRETQYSSHCHSRDESHSHSTTWKRSNQGGTKTSCIH 333 H +S HG+T E+ + H H D HSH + G + S H Sbjct: 56 HGHSHAHGHGHT-HESIWHGHTHGHDHGHSHGDLHHGHSHGHSHESLYH 103
>URED_KLEAE (Q09063) Urease accessory protein ureD| Length = 270 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 272 CDSSRLWQWLLYCVSRPVL 216 C SSRL W L C+ RPV+ Sbjct: 133 CASSRLLAWDLLCLGRPVI 151
>LAC3_THACU (Q02079) Laccase 3 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 572 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +1 Query: 145 WAVAKQVPLYWSCKHPYSIWVEHGN-TGRETQYSSHCHSR 261 W+V++ + YW KH + HG R + S H H R Sbjct: 320 WSVSEAIIKYWKHKHGRGLLSGHGGLKARMMEGSLHLHGR 359
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/44 (36%), Positives = 17/44 (38%) Frame = -2 Query: 304 GCSFSRWCYENATHHDCGSGCCIVFHGLCCRVPPR*SRGACSSS 173 GCS C CGS CC CC+ P S C SS Sbjct: 195 GCSQCSCCKPCCCSSGCGSSCC---QSSCCK--PCCSSSGCGSS 233
>ROCA1_BACHD (Q9K9B2) 1-pyrroline-5-carboxylate dehydrogenase 1 (EC 1.5.1.12)| (P5C dehydrogenase 1) Length = 515 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 158 NKYLFTGAASTPTLSGWNTATQAVKHNTAATATVVMSRILIAP 286 N+Y +T T T+S WN A A+ TA V + +++ P Sbjct: 165 NRYFYTPMGVTVTISPWNFAL-AIMVGTAVAPIVTGNTVVLKP 206
>KE4_HUMAN (Q92504) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +1 Query: 187 HPYSIWVEHGNTGRETQYSSHCHSRDESHSHSTTWKRSNQGGTKTSCIH 333 H +S HG+T E+ + H H D HSH + G + S H Sbjct: 56 HGHSHAHGHGHT-HESIWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYH 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,534,958 Number of Sequences: 219361 Number of extensions: 1052719 Number of successful extensions: 3358 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3340 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
