ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full ... 482 e-133
2gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full ... 163 4e-37
3gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome... 109 5e-21
4gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 109 5e-21
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 109 5e-21
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 109 5e-21
7gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory ... 46 0.064
8gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full ... 46 0.064
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
10dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
11dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
12dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
13dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
14dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
15dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
16gb|AY107147.1| Zea mays PCO125081 mRNA sequence 46 0.064
17emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 o... 44 0.25
18gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 4.0
19gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, comple... 40 4.0
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
21ref|XM_315621.2| Anopheles gambiae str. PEST ENSANGP00000007262 ... 40 4.0
22dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 4.0
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
24emb|AL844877.2|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.0
25emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chro... 40 4.0

>gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full insert mRNA sequence
          Length = 1993

 Score =  482 bits (243), Expect = e-133
 Identities = 290/306 (94%), Gaps = 6/306 (1%)
 Strand = Plus / Minus

                                                                        
Query: 3    tgatctagtagctctactcatgagtataagaacttgctatgtactgaattaacacacttt 62
            ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 tgatctagttgctctactcacaagtataagaacttgctatgtactgaattaacacacttt 1801

                                                                        
Query: 63   ccgcaaaaagaac------ttgtggctggtttgtctacagaagttaaaaattctccttgt 116
            | ||||||||| |      |||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1800 cggcaaaaagagcaacttcttgtggctgggtcgtctacagaagttaaaaattctccttgt 1741

                                                                        
Query: 117  ggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagctcacgcagctcct 176
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1740 ggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaaggtcacgcagctcct 1681

                                                                        
Query: 177  ttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacggtggttgaggg 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 ttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacggtggttgaggg 1621

                                                                        
Query: 237  cgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtcttgacacgggtgc 296
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1620 cgatacgcttgtagacgttgcgccagtttggtcgcgcaaagtgggtcttgacacgggtgc 1561

                  
Query: 297  cggaga 302
            ||||||
Sbjct: 1560 cggaga 1555



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>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA
           sequence
          Length = 543

 Score =  163 bits (82), Expect = 4e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                       
Query: 107 ttctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagctca 166
           |||||||||||||||||||| || ||||| ||||| | |||||| || || || ||||| 
Sbjct: 370 ttctccttgtggaactcgaacttggtgttggtcttccgcgagaagtcctgcgccagctcg 311

                                                                       
Query: 167 cgcagctcctttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacgg 226
           ||||||||||| || |||||||| || ||||||||||| |||||||| ||||| |   ||
Sbjct: 310 cgcagctccttggtcagcaccggggcgccgcagtagaacactccgacgcgctggttctgg 251

                                                                       
Query: 227 tggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtcttg 286
           |||||||| ||||| |||||||||||||||||||| || || | ||| ||||||||||||
Sbjct: 250 tggttgagcgcgatgcgcttgtagacgttgcgccagttaggcctggcgaagtgggtcttg 191

                         
Query: 287 acacgggtgccgga 300
           || |||||||||||
Sbjct: 190 acgcgggtgccgga 177



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>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08,
              complete sequence
          Length = 197156

 Score =  109 bits (55), Expect = 5e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                          
Query: 224    cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 283
              ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct: 189599 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 189658

                                 
Query: 284    ttgacacgggtgccggaga 302
              ||||| |||||||||||||
Sbjct: 189659 ttgacgcgggtgccggaga 189677



 Score =  105 bits (53), Expect = 8e-20
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                          
Query: 104    aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 163
              ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || |||
Sbjct: 188373 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 188432

                                                       
Query: 164    tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 204
              |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 188433 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 188473



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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041J17, complete sequence
          Length = 148829

 Score =  109 bits (55), Expect = 5e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 224   cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 283
             ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct: 28954 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 29013

                                
Query: 284   ttgacacgggtgccggaga 302
             ||||| |||||||||||||
Sbjct: 29014 ttgacgcgggtgccggaga 29032



 Score =  105 bits (53), Expect = 8e-20
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                         
Query: 104   aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 163
             ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || |||
Sbjct: 27728 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 27787

                                                      
Query: 164   tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 204
             |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 27788 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 27828



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  109 bits (55), Expect = 5e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 224      cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 283
                ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct: 18925583 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 18925642

                                   
Query: 284      ttgacacgggtgccggaga 302
                ||||| |||||||||||||
Sbjct: 18925643 ttgacgcgggtgccggaga 18925661



 Score =  105 bits (53), Expect = 8e-20
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 104      aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 163
                ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || |||
Sbjct: 18924357 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 18924416

                                                         
Query: 164      tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 204
                |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 18924417 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 18924457



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  109 bits (55), Expect = 5e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 224      cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 283
                ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct: 19084405 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 19084464

                                   
Query: 284      ttgacacgggtgccggaga 302
                ||||| |||||||||||||
Sbjct: 19084465 ttgacgcgggtgccggaga 19084483



 Score =  105 bits (53), Expect = 8e-20
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 104      aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 163
                ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || |||
Sbjct: 19083179 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 19083238

                                                         
Query: 164      tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 204
                |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 19083239 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 19083279



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>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase
            protein B (rbohB) mRNA, complete cds
          Length = 3334

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 107  ttctccttgtggaactcgaattttgtgtttgtctt 141
            |||||||||||||| || ||| |||||||||||||
Sbjct: 3006 ttctccttgtggaaatcaaatcttgtgtttgtctt 2972



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>gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full insert mRNA
           sequence
          Length = 876

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 107 ttctccttgtggaactcgaattttgtgtttgtctt 141
           ||||||||||||||||| || |||||||| |||||
Sbjct: 567 ttctccttgtggaactcaaactttgtgttcgtctt 533



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 107      ttctccttgtggaactcgaattttgtgtttgtctt 141
                |||||||||||||| || ||| |||||||||||||
Sbjct: 14604506 ttctccttgtggaaatcaaatcttgtgtttgtctt 14604540



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>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1164G11
          Length = 142699

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 107   ttctccttgtggaactcgaattttgtgtttgtctt 141
             |||||||||||||| || ||| |||||||||||||
Sbjct: 85883 ttctccttgtggaaatcaaatcttgtgtttgtctt 85917



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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0514H03
          Length = 167230

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 107    ttctccttgtggaactcgaattttgtgtttgtctt 141
              |||||||||||||| || ||| |||||||||||||
Sbjct: 163819 ttctccttgtggaaatcaaatcttgtgtttgtctt 163853



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>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full
            insert sequence
          Length = 3255

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 107  ttctccttgtggaactcgaattttgtgtttgtctt 141
            |||||||||||||| || ||| |||||||||||||
Sbjct: 3079 ttctccttgtggaaatcaaatcttgtgtttgtctt 3045



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>dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G19, full
            insert sequence
          Length = 3731

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 107  ttctccttgtggaactcgaattttgtgtttgtctt 141
            |||||||||||||| || ||| |||||||||||||
Sbjct: 3598 ttctccttgtggaaatcaaatcttgtgtttgtctt 3564



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>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full
            insert sequence
          Length = 3198

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 107  ttctccttgtggaactcgaattttgtgtttgtctt 141
            |||||||||||||| || ||| |||||||||||||
Sbjct: 3082 ttctccttgtggaaatcaaatcttgtgtttgtctt 3048



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>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full
            insert sequence
          Length = 2978

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 107  ttctccttgtggaactcgaattttgtgtttgtctt 141
            |||||||||||||| || ||| |||||||||||||
Sbjct: 2719 ttctccttgtggaaatcaaatcttgtgtttgtctt 2685



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>gb|AY107147.1| Zea mays PCO125081 mRNA sequence
          Length = 938

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 107 ttctccttgtggaactcgaattttgtgtttgtctt 141
           |||||||||||||||||||| || || ||||||||
Sbjct: 638 ttctccttgtggaactcgaacttagtatttgtctt 604



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>emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 on chromosome 3,
             complete sequence
          Length = 114882

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 104   aaattctccttgtggaactcgaattttgtgtttgtctt 141
             ||||||||||||||||| || ||||| ||| |||||||
Sbjct: 86413 aaattctccttgtggaaatcaaatttggtgcttgtctt 86376



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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     tgtgcaagctcacgcagctc 174
               ||||||||||||||||||||
Sbjct: 1139119 tgtgcaagctcacgcagctc 1139100



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>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence
          Length = 218449

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tacagaagttaaaaattctc 111
             ||||||||||||||||||||
Sbjct: 81321 tacagaagttaaaaattctc 81340



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      aagttaaaaattctccttgt 116
               ||||||||||||||||||||
Sbjct: 8634912 aagttaaaaattctccttgt 8634893



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>ref|XM_315621.2| Anopheles gambiae str. PEST ENSANGP00000007262 (ENSANGG00000005477),
            partial mRNA
          Length = 1923

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 271  ggcaaagtgggtcttgacacgggt 294
            |||||||| |||||||||||||||
Sbjct: 1095 ggcaaagttggtcttgacacgggt 1072



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>dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-36B5, complete
             sequence
          Length = 148490

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    taagaacttgctatgtactg 48
             ||||||||||||||||||||
Sbjct: 67835 taagaacttgctatgtactg 67854



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      aagttaaaaattctccttgt 116
               ||||||||||||||||||||
Sbjct: 8634795 aagttaaaaattctccttgt 8634776



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>emb|AL844877.2|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb0034B07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125000

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aagttaaaaattctccttgt 116
             ||||||||||||||||||||
Sbjct: 97659 aagttaaaaattctccttgt 97640



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>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete
             sequence
          Length = 141025

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tttgtctacagaagttaaaa 105
             ||||||||||||||||||||
Sbjct: 33596 tttgtctacagaagttaaaa 33577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,231,361
Number of Sequences: 3902068
Number of extensions: 2231361
Number of successful extensions: 51434
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51321
Number of HSP's gapped (non-prelim): 113
length of query: 302
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 280
effective length of database: 17,147,199,772
effective search space: 4801215936160
effective search space used: 4801215936160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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