ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06b11 |
|---|---|
| Clone Library Name | barley_pub |
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 101 AVIRHGKWYICWMLLATSTVGLTLSRLL 18 AV+ G W +CWM+LA+S G L L Sbjct: 132 AVMTSGGWRVCWMILASSWFGGALDSFL 159
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 29.6 bits (65), Expect = 2.0 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Frame = +1 Query: 31 RVRPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTH 201 R RPT + N + I+ P C + N T PV +L +E+F T Sbjct: 276 RDRPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTL 332 Query: 202 TKFQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 300 T F KI T+ + RP S PT+S Sbjct: 333 TIFADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>PTTG_PONPY (Q5NVI6) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Frame = -2 Query: 209 NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 45 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 44 VGLTL 30 VG TL Sbjct: 105 VGGTL 109
>PTTG_HUMAN (P53801) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Frame = -2 Query: 209 NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 45 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 44 VGLTL 30 VG TL Sbjct: 105 VGGTL 109
>INX5_CAEEL (Q23027) Innexin-5| Length = 447 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = -1 Query: 165 YWYWSSMLSTLSVCVVIPGGVCCNSAWEMVYLLDVIGNIHCWSNPFTTLEFE 10 +W+W + L+VC + + W ++Y+L +G +S T EF+ Sbjct: 287 FWFWLLFVGLLTVCSL--------AYWAVIYMLQSVGRNFIYSYLQQTPEFQ 330
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 75 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 74 ICW 66 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -1 Query: 216 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 103 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 4.5 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 233 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 87 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 75 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 74 ICW 66 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 75 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 74 ICW 66 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 75 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 74 ICW 66 + + Sbjct: 3116 VMY 3118
>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor| Length = 487 Score = 28.1 bits (61), Expect = 5.8 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Frame = +1 Query: 1 DATFKFKSRERVRPTVDVANNIQQIYHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGK 180 +AT+K + +R R + P T D G T QC + PV K Sbjct: 225 NATYKVEVIQRTRSKPILTGT------HPVNTTVDYGGT--TSFQCKVRSDVKPVIQWLK 276 Query: 181 RELFHTHTKFQTKIDRYSTKFMFLLYDLIW-RPSSSH 288 R + T +K+ + ID KF+ L +W RP S+ Sbjct: 277 RVEYGTESKYNSTIDVGGQKFVVLPTGEVWSRPDGSY 313
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 125 HTDNVDNMLDQYQYTLWEKENSST 196 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 66 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 76 YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLL 255 Y F C +S G N H V HS+ K L + H + +DRY + LL Sbjct: 59 YQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILVNFHWQVSEILDRYKSNSAQLL 117 Query: 256 YDLIWRPSSSHPTISLH 306 + +P+ S + H Sbjct: 118 VEARVQPNPSKHVPTSH 134
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 66 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 236 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 66 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151
>CAH6_CANFA (Q865C0) Carbonic anhydrase 6 precursor (EC 4.2.1.1) (Carbonic| anhydrase VI) (Carbonate dehydratase VI) (CA-VI) Length = 320 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/67 (28%), Positives = 27/67 (40%) Frame = +2 Query: 8 PSNSRVVKGLDQQWMLPITSNKYTISHAELQQTPPGITTHTDNVDNMLDQYQYTLWEKEN 187 P S V+ GLD + MLP ++ Y L P H + + + W+ EN Sbjct: 190 PGQSTVLSGLDIEDMLPENTHHYYTYRGSLTTPPCTENVHWFVLVHHVRLSSIQTWKLEN 249 Query: 188 SSTRTQN 208 S QN Sbjct: 250 SILDHQN 256
>SCN3A_HUMAN (Q9NY46) Sodium channel protein type 3 alpha subunit (Sodium| channel protein type III alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.3) (Sodium channel protein, brain III alpha subunit) (Voltage-gated sodium channel subtype I Length = 2000 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/64 (25%), Positives = 29/64 (45%) Frame = +2 Query: 8 PSNSRVVKGLDQQWMLPITSNKYTISHAELQQTPPGITTHTDNVDNMLDQYQYTLWEKEN 187 P+N ++ +D ++ + ++ Q P G TT T+ L YQ ++ E+ Sbjct: 639 PANGKMHSTVDCNGVVSLVGGPSALTSPTGQLPPEGTTTETEVRKRRLSSYQISMEMLED 698 Query: 188 SSTR 199 SS R Sbjct: 699 SSGR 702
>CAH6_HUMAN (P23280) Carbonic anhydrase 6 precursor (EC 4.2.1.1) (Carbonic| anhydrase VI) (Carbonate dehydratase VI) (CA-VI) (Secreted carbonic anhydrase) (Salivary carbonic anhydrase) Length = 308 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/61 (27%), Positives = 24/61 (39%) Frame = +2 Query: 8 PSNSRVVKGLDQQWMLPITSNKYTISHAELQQTPPGITTHTDNVDNMLDQYQYTLWEKEN 187 P + GLD Q MLP Y H L P H + + + + +W+ EN Sbjct: 190 PGQRTTLTGLDVQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLEN 249 Query: 188 S 190 S Sbjct: 250 S 250
>YGZB_BACSU (Q7WY74) UPF0295 protein ygzB| Length = 117 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -1 Query: 168 VYWYWSSMLSTLSVCVVIPGGVCCNSAWEMVYLLDVIGNIHC 43 V ++W MLST +V V+ PG C+ +++ ++D+ +HC Sbjct: 55 VVYFWIGMLSTKAVRVICPG---CDKETKVLGVVDMC--MHC 91
>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 me Length = 695 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -2 Query: 227 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 123 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNIISLATSCFQRRCCCCCRVCCRVCCMV 632
>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 697 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -2 Query: 227 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 123 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNVISLATTCFQRRCCCCCRVCCRVCCMV 632 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,154,361 Number of Sequences: 219361 Number of extensions: 1089178 Number of successful extensions: 3052 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3050 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
