ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP391_DROME (Q9VQD2) Probable cytochrome P450 309a1 (EC 1.14.-.-... 29 3.4
2SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 7.7
3DJLA_SHEON (Q8EB99) DnaJ-like protein djlA 28 7.7
4GATD_METAC (Q8TR66) Glutamyl-tRNA(Gln) amidotransferase subunit ... 28 7.7

>CP391_DROME (Q9VQD2) Probable cytochrome P450 309a1 (EC 1.14.-.-) (CYPCCCIXA1)|
          Length = 529

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 219 IGEAEKKLDA*SGSAFESALCFYWDLLAFFVWKLILHLFFADGGDVTFIENSNGTMKLQ 43
           IG+ +K     S  AF S + F   L+A FV KL    FF    D  F+  +   + L+
Sbjct: 236 IGDFQKTSTDWSAHAFSSMIRFNKTLVAIFVRKLFSMRFFTKATDEFFLRLTQDAVNLR 294



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>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS)
          Length = 1217

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 297  YREKAPPSVQEEDMRKLTAFFEQLRVIGEA 208
            Y+EK P  VQE+D  KL     +L  + EA
Sbjct: 1180 YKEKVPVKVQEQDTEKLRQSQTELEKVKEA 1209



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>DJLA_SHEON (Q8EB99) DnaJ-like protein djlA|
          Length = 262

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 300 GYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKK 199
           G+  KA   V E D+R  T   +Q+R+ G+A K+
Sbjct: 65  GHVAKASGRVTETDIRIATLLMDQMRLTGDARKE 98



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>GATD_METAC (Q8TR66) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)|
           (Glu-ADT subunit D)
          Length = 424

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 214 TDDPQLLEKGGELPHVLLLDTGGSLLS 294
           T++ +L E G +LP + +L TGG++ S
Sbjct: 71  TNEEELPEPGKKLPKIAILSTGGTIAS 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,742,676
Number of Sequences: 219361
Number of extensions: 765041
Number of successful extensions: 2223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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