ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, com... 40 3.2
2gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, comp... 40 3.2
3emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in... 40 3.2
4gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, comp... 40 3.2
5gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 3.2
6emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in... 40 3.2

>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   ctttctcaatattgtcttcc 188
             ||||||||||||||||||||
Sbjct: 12002 ctttctcaatattgtcttcc 11983



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>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    ctttctcaatattgtcttcc 188
              ||||||||||||||||||||
Sbjct: 195772 ctttctcaatattgtcttcc 195753



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>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18,
              complete sequence
          Length = 164758

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    tgtttcaggctctctttctc 175
              ||||||||||||||||||||
Sbjct: 128434 tgtttcaggctctctttctc 128415



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>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   tatgtttcaggctctctttc 173
             ||||||||||||||||||||
Sbjct: 64829 tatgtttcaggctctctttc 64810



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>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  tatgtttcaggctctctttc 173
            ||||||||||||||||||||
Sbjct: 2684 tatgtttcaggctctctttc 2665



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>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   tgtttcaggctctctttctc 175
             ||||||||||||||||||||
Sbjct: 91226 tgtttcaggctctctttctc 91207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,422,984
Number of Sequences: 3902068
Number of extensions: 2422984
Number of successful extensions: 36762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36754
Number of HSP's gapped (non-prelim): 8
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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