ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192023.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
4dbj|AK068284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
5ref|NM_192028.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
6ref|NM_192026.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
7dbj|AK099717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8gb|AY146173.1| HIV-1 isolate 134eMa88 from Malawi envelope glyco... 44 0.38
9gb|AC034254.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.5
10gb|AC162178.2| Mus musculus BAC clone RP23-410H21 from chromosom... 42 1.5
11emb|AJ429852.1|HIM429852 Human immunodeficiency virus type 1 pro... 42 1.5
12dbj|AB003011.1| Human immunodeficiency virus type 1 env gene for... 42 1.5
13dbj|AB003010.1| Human immunodeficiency virus type 1 env gene for... 42 1.5
14dbj|AB003009.1| Human immunodeficiency virus type 1 env gene for... 42 1.5
15ref|XM_581281.2| PREDICTED: Bos taurus similar to Probable G-pro... 40 6.0
16emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chr... 40 6.0
17emb|AL031746.9|PFMAL1P3 Plasmodium falciparum DNA from MAL1P3 40 6.0
18emb|AL645903.8| Mouse DNA sequence from clone RP23-179M4 on chro... 40 6.0
19gb|DQ061633.1| HIV-1 isolate K69_04_279 from Belgium envelope gl... 40 6.0
20gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, compl... 40 6.0
21gb|AC025656.7| Homo sapiens chromosome 18, clone RP11-36L19, com... 40 6.0
22gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target ... 40 6.0
23gb|AC020622.3|F22M8 Sequence of BAC F22M8 from Arabidopsis thali... 40 6.0
24gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y,... 40 6.0
25dbj|AB016878.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 6.0 
>ref|NM_192023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2709

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                        
Query: 180  cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
            |||||||| ||||||| |||||||||||||  | |||| ||||||||||| || | ||||
Sbjct: 2627 cgctgctgaaagaagagcagcacggccagcgccgccgccccgcacggtatcacgacgtcc 2568

                             
Query: 240  cacgcgacgccgaagag 256
            |||||||||| ||||||
Sbjct: 2567 cacgcgacgctgaagag 2551



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 356  ggtgccccccgcgtagaaccacggcgagat 385
            |||||| ||| |||||||||||||||||||
Sbjct: 2445 ggtgccgcccacgtagaaccacggcgagat 2416
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                            
Query: 180      cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
                |||||||| ||||||| |||||||||||||  | |||| ||||||||||| || | ||||
Sbjct: 27864694 cgctgctgaaagaagagcagcacggccagcgccgccgccccgcacggtatcacgacgtcc 27864635

                                 
Query: 240      cacgcgacgccgaagag 256
                |||||||||| ||||||
Sbjct: 27864634 cacgcgacgctgaagag 27864618



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 180      cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
                |||||||||||||| | ||  | |||||||||| |||||||  |||| |  || ||||||
Sbjct: 27892368 cgctgctgcaagaacagcacgaaggccagcaacgccgctcccaacggcacaacgatgtcc 27892309

                                
Query: 240      cacgcgacgccgaaga 255
                ||||||||||||||||
Sbjct: 27892308 cacgcgacgccgaaga 27892293



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                            
Query: 180      cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
                |||||||||||||| | |||||  |||||| || |||| ||  |||| | | | | ||||
Sbjct: 27879131 cgctgctgcaagaacagcagcagcgccagcgacgccgcccccaacggcacggcgacgtcc 27879072

                                                        
Query: 240      cacgcgacgccgaagaggtcgccccgtgggctggcgtaca 279
                ||||||||||||||||| ||| | |||||||| |||||||
Sbjct: 27879071 cacgcgacgccgaagagatcgtcgcgtgggctcgcgtaca 27879032



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 360      ccccccgcgtagaaccacggcgagatcgc 388
                ||||| |||||||||||||||||||||||
Sbjct: 27892200 cccccggcgtagaaccacggcgagatcgc 27892172



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 356      ggtgccccccgcgtagaaccacggcgagat 385
                |||||| ||| |||||||||||||||||||
Sbjct: 27864512 ggtgccgcccacgtagaaccacggcgagat 27864483
to top
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144G04
          Length = 194459

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 180   cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
             |||||||| ||||||| |||||||||||||  | |||| ||||||||||| || | ||||
Sbjct: 51375 cgctgctgaaagaagagcagcacggccagcgccgccgccccgcacggtatcacgacgtcc 51316

                              
Query: 240   cacgcgacgccgaagag 256
             |||||||||| ||||||
Sbjct: 51315 cacgcgacgctgaagag 51299



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                         
Query: 180   cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
             |||||||||||||| | ||  | |||||||||| |||||||  |||| |  || ||||||
Sbjct: 79049 cgctgctgcaagaacagcacgaaggccagcaacgccgctcccaacggcacaacgatgtcc 78990

                             
Query: 240   cacgcgacgccgaaga 255
             ||||||||||||||||
Sbjct: 78989 cacgcgacgccgaaga 78974



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                         
Query: 180   cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
             |||||||||||||| | |||||  |||||| || |||| ||  |||| | | | | ||||
Sbjct: 65812 cgctgctgcaagaacagcagcagcgccagcgacgccgcccccaacggcacggcgacgtcc 65753

                                                     
Query: 240   cacgcgacgccgaagaggtcgccccgtgggctggcgtaca 279
             ||||||||||||||||| ||| | |||||||| |||||||
Sbjct: 65752 cacgcgacgccgaagagatcgtcgcgtgggctcgcgtaca 65713



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 360   ccccccgcgtagaaccacggcgagatcgc 388
             ||||| |||||||||||||||||||||||
Sbjct: 78881 cccccggcgtagaaccacggcgagatcgc 78853



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 356   ggtgccccccgcgtagaaccacggcgagat 385
             |||||| ||| |||||||||||||||||||
Sbjct: 51193 ggtgccgcccacgtagaaccacggcgagat 51164
to top
>dbj|AK068284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146I22, full
            insert sequence
          Length = 3081

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                        
Query: 180  cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
            |||||||| ||||||| |||||||||||||  | |||| ||||||||||| || | ||||
Sbjct: 2670 cgctgctgaaagaagagcagcacggccagcgccgccgccccgcacggtatcacgacgtcc 2611

                             
Query: 240  cacgcgacgccgaagag 256
            |||||||||| ||||||
Sbjct: 2610 cacgcgacgctgaagag 2594



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 356  ggtgccccccgcgtagaaccacggcgagat 385
            |||||| ||| |||||||||||||||||||
Sbjct: 2488 ggtgccgcccacgtagaaccacggcgagat 2459
to top
>ref|NM_192028.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2925

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 180  cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
            |||||||||||||| | ||  | |||||||||| |||||||  |||| |  || ||||||
Sbjct: 2843 cgctgctgcaagaacagcacgaaggccagcaacgccgctcccaacggcacaacgatgtcc 2784

                            
Query: 240  cacgcgacgccgaaga 255
            ||||||||||||||||
Sbjct: 2783 cacgcgacgccgaaga 2768



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 360  ccccccgcgtagaaccacggcgagatcgc 388
            ||||| |||||||||||||||||||||||
Sbjct: 2675 cccccggcgtagaaccacggcgagatcgc 2647
to top
>ref|NM_192026.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2904

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                        
Query: 180  cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
            |||||||||||||| | |||||  |||||| || |||| ||  |||| | | | | ||||
Sbjct: 2774 cgctgctgcaagaacagcagcagcgccagcgacgccgcccccaacggcacggcgacgtcc 2715

                                                    
Query: 240  cacgcgacgccgaagaggtcgccccgtgggctggcgtaca 279
            ||||||||||||||||| ||| | |||||||| |||||||
Sbjct: 2714 cacgcgacgccgaagagatcgtcgcgtgggctcgcgtaca 2675
to top
>dbj|AK099717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013086I08, full
            insert sequence
          Length = 3050

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                        
Query: 180  cgctgctgcaagaagaccagcacggccagcaaccccgctccgcacggtatgacaatgtcc 239
            |||||||||||||| | |||||  |||||| || |||| ||  |||| | | | | ||||
Sbjct: 2855 cgctgctgcaagaacagcagcagcgccagcgacgccgcccccaacggcacggcgacgtcc 2796

                                                    
Query: 240  cacgcgacgccgaagaggtcgccccgtgggctggcgtaca 279
            ||||||||||||||||| ||| | |||||||| |||||||
Sbjct: 2795 cacgcgacgccgaagagatcgtcgcgtgggctcgcgtaca 2756
to top
>gb|AY146173.1| HIV-1 isolate 134eMa88 from Malawi envelope glycoprotein (env)
           gene, partial cds
          Length = 417

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 106 tatctcgttttctgctagacta 127
           ||||||||||||||||||||||
Sbjct: 165 tatctcgttttctgctagacta 144
to top
>gb|AC034254.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-257K10, complete
             sequence
          Length = 116022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     caaggtacctttactttgttt 25
             |||||||||||||||||||||
Sbjct: 44053 caaggtacctttactttgttt 44073
to top
>gb|AC162178.2| Mus musculus BAC clone RP23-410H21 from chromosome 6, complete sequence
          Length = 188061

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     caaggtacctttactttgttt 25
             |||||||||||||||||||||
Sbjct: 39964 caaggtacctttactttgttt 39984
to top
>emb|AJ429852.1|HIM429852 Human immunodeficiency virus type 1 proviral partial env gene for
           gp120, strain 97NE82
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 tatctcgttttctgctagact 126
           |||||||||||||||||||||
Sbjct: 458 tatctcgttttctgctagact 438
to top
>dbj|AB003011.1| Human immunodeficiency virus type 1 env gene for envelope
           glycoprotein, partial cds, clone 63PE341t
          Length = 720

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 tatctcgttttctgctagact 126
           |||||||||||||||||||||
Sbjct: 447 tatctcgttttctgctagact 427
to top
>dbj|AB003010.1| Human immunodeficiency virus type 1 env gene for envelope
           glycoprotein, partial cds, clone 63PE331t
          Length = 720

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 tatctcgttttctgctagact 126
           |||||||||||||||||||||
Sbjct: 447 tatctcgttttctgctagact 427
to top
>dbj|AB003009.1| Human immunodeficiency virus type 1 env gene for envelope
           glycoprotein, partial cds, clone 63PE321t
          Length = 720

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 tatctcgttttctgctagact 126
           |||||||||||||||||||||
Sbjct: 447 tatctcgttttctgctagact 427
to top
>ref|XM_581281.2| PREDICTED: Bos taurus similar to Probable G-protein coupled
           receptor 35 (LOC505056), mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 agaagaccagcacggccagc 209
           ||||||||||||||||||||
Sbjct: 673 agaagaccagcacggccagc 654
to top
>emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chromosome 13, complete
              sequence
          Length = 160587

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    cagggacacgttcagaatga 426
              ||||||||||||||||||||
Sbjct: 102882 cagggacacgttcagaatga 102901
to top
>emb|AL031746.9|PFMAL1P3 Plasmodium falciparum DNA from MAL1P3
          Length = 67970

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   gtatctcgttttctgctagactag 128
             |||| |||||||||||||||||||
Sbjct: 19211 gtatatcgttttctgctagactag 19234
to top
>emb|AL645903.8| Mouse DNA sequence from clone RP23-179M4 on chromosome 11, complete
             sequence
          Length = 181669

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gaccatctcatctccacctg 156
             ||||||||||||||||||||
Sbjct: 66404 gaccatctcatctccacctg 66423
to top
>gb|DQ061633.1| HIV-1 isolate K69_04_279 from Belgium envelope glycoprotein (env)
           gene, partial cds
          Length = 444

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 tctcgttttctgctagacta 127
           ||||||||||||||||||||
Sbjct: 130 tctcgttttctgctagacta 111
to top
>gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, complete sequence
          Length = 159838

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ctgctgcaagaagaccagca 201
              ||||||||||||||||||||
Sbjct: 136411 ctgctgcaagaagaccagca 136430
to top
>gb|AC025656.7| Homo sapiens chromosome 18, clone RP11-36L19, complete sequence
          Length = 193351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    gaccatctcatctccacctg 156
              ||||||||||||||||||||
Sbjct: 161854 gaccatctcatctccacctg 161835
to top
>gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target subunit 2 (MYPT2) gene, exons 11
              through 24, and complete cds
          Length = 150000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ctgctgcaagaagaccagca 201
              ||||||||||||||||||||
Sbjct: 126944 ctgctgcaagaagaccagca 126963
to top
>gb|AC020622.3|F22M8 Sequence of BAC F22M8 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 47295

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ctcctcctctgcgatccaat 178
             ||||||||||||||||||||
Sbjct: 32896 ctcctcctctgcgatccaat 32915
to top
>gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y, complete sequence
          Length = 171834

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ctgctgcaagaagaccagca 201
              ||||||||||||||||||||
Sbjct: 109931 ctgctgcaagaagaccagca 109950
to top
>dbj|AB016878.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15
          Length = 85567

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   ctccgcacggtatgacaatg 236
             ||||||||||||||||||||
Sbjct: 14791 ctccgcacggtatgacaatg 14810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,770,761
Number of Sequences: 3902068
Number of extensions: 2770761
Number of successful extensions: 49907
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49838
Number of HSP's gapped (non-prelim): 69
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top