Clone Name | rbastl06a08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete sequence Length = 189102 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 acacatgataaacagggaggca 149 |||||||||||||||||||||| Sbjct: 37164 acacatgataaacagggaggca 37143
>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence Length = 176143 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 ttcagtcatggcttcagatccc 206 |||||||||||||||||||||| Sbjct: 62963 ttcagtcatggcttcagatccc 62942
>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete sequence Length = 195784 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 ttcagtcatggcttcagatccc 206 |||||||||||||||||||||| Sbjct: 96715 ttcagtcatggcttcagatccc 96694
>gb|AY486465.1| Homo sapiens glutathione transferase kappa 1 (GSTK1) gene, complete cds Length = 7750 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 agacggggcagagggcagctt 283 ||||||||||||||||||||| Sbjct: 2898 agacggggcagagggcagctt 2878
>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence Length = 155915 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 atttggttgtatgtcacatgg 36 ||||||||||||||||||||| Sbjct: 65305 atttggttgtatgtcacatgg 65325
>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 153084 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 270 gcagagggcagcttctttctacatt 294 |||||||||||||| |||||||||| Sbjct: 58317 gcagagggcagcttatttctacatt 58293
>emb|AL158198.14| Human DNA sequence from clone RP11-239H6 on chromosome 6 Contains the 5' end of the gene for a novel protein, a novel gene, a pseudogene similar to tropomysin and a CpG island, complete sequence Length = 173456 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 ctgacgacatcccaggccacc 366 ||||||||||||||||||||| Sbjct: 12225 ctgacgacatcccaggccacc 12245
>gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, complete sequence Length = 167869 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 agacggggcagagggcagctt 283 ||||||||||||||||||||| Sbjct: 80958 agacggggcagagggcagctt 80938
>gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169393 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 gcagagggcagcttctttctacatt 294 |||||||||||||| |||||||||| Sbjct: 156745 gcagagggcagcttatttctacatt 156769
>ref|XM_959899.1| Neurospora crassa OR74A hypothetical protein (NCU02589.1) partial mRNA Length = 1893 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 acaccacaaaagagaaccaaccac 322 |||||||| ||||||||||||||| Sbjct: 587 acaccacacaagagaaccaaccac 610
>ref|XM_331787.1| Neurospora crassa OR74A hypothetical protein (NCU02589.1) partial mRNA Length = 1893 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 acaccacaaaagagaaccaaccac 322 |||||||| ||||||||||||||| Sbjct: 587 acaccacacaagagaaccaaccac 610
>ref|XM_658145.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5633.2), mRNA Length = 1794 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gttgcaacggatatagcaga 69 |||||||||||||||||||| Sbjct: 625 gttgcaacggatatagcaga 644
>gb|AY071517.1| Drosophila melanogaster RE56935 full length cDNA Length = 3406 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tttgtaccttctcgacgccc 258 |||||||||||||||||||| Sbjct: 2269 tttgtaccttctcgacgccc 2250
>gb|AC153528.2| Mus musculus 10 BAC RP23-75N1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 159605 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttggttgtatgtcacatggc 37 |||||||||||||||||||| Sbjct: 100315 ttggttgtatgtcacatggc 100334
>gb|AC012671.7| Homo sapiens BAC clone RP11-554H10 from 2, complete sequence Length = 198694 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aagcttctccctactcgctg 238 |||||||||||||||||||| Sbjct: 83354 aagcttctccctactcgctg 83335
>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE Length = 111922 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 atttccattagttacaataa 168 |||||||||||||||||||| Sbjct: 19958 atttccattagttacaataa 19977 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,166,642 Number of Sequences: 3902068 Number of extensions: 3166642 Number of successful extensions: 54503 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54476 Number of HSP's gapped (non-prelim): 27 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)