ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosom... 44 0.32
2gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome... 44 0.32
3gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome... 44 0.32
4gb|AY486465.1| Homo sapiens glutathione transferase kappa 1 (GST... 42 1.3
5gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, compl... 42 1.3
6gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Can... 42 1.3
7emb|AL158198.14| Human DNA sequence from clone RP11-239H6 on chr... 42 1.3
8gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, comple... 42 1.3
9gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cance... 42 1.3
10ref|XM_959899.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
11ref|XM_331787.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
12ref|XM_658145.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.0
13gb|AY071517.1| Drosophila melanogaster RE56935 full length cDNA 40 5.0
14gb|AC153528.2| Mus musculus 10 BAC RP23-75N1 (Roswell Park Cance... 40 5.0
15gb|AC012671.7| Homo sapiens BAC clone RP11-554H10 from 2, comple... 40 5.0
16emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i2... 40 5.0

>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete
             sequence
          Length = 189102

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   acacatgataaacagggaggca 149
             ||||||||||||||||||||||
Sbjct: 37164 acacatgataaacagggaggca 37143



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>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence
          Length = 176143

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 185   ttcagtcatggcttcagatccc 206
             ||||||||||||||||||||||
Sbjct: 62963 ttcagtcatggcttcagatccc 62942



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>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete sequence
          Length = 195784

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 185   ttcagtcatggcttcagatccc 206
             ||||||||||||||||||||||
Sbjct: 96715 ttcagtcatggcttcagatccc 96694



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>gb|AY486465.1| Homo sapiens glutathione transferase kappa 1 (GSTK1) gene, complete
            cds
          Length = 7750

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 263  agacggggcagagggcagctt 283
            |||||||||||||||||||||
Sbjct: 2898 agacggggcagagggcagctt 2878



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>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence
          Length = 155915

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    atttggttgtatgtcacatgg 36
             |||||||||||||||||||||
Sbjct: 65305 atttggttgtatgtcacatgg 65325



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>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 153084

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 270   gcagagggcagcttctttctacatt 294
             |||||||||||||| ||||||||||
Sbjct: 58317 gcagagggcagcttatttctacatt 58293



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>emb|AL158198.14| Human DNA sequence from clone RP11-239H6 on chromosome 6 Contains the
             5' end of the gene for a novel protein, a novel gene, a
             pseudogene similar to tropomysin and a CpG island,
             complete sequence
          Length = 173456

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   ctgacgacatcccaggccacc 366
             |||||||||||||||||||||
Sbjct: 12225 ctgacgacatcccaggccacc 12245



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>gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, complete sequence
          Length = 167869

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   agacggggcagagggcagctt 283
             |||||||||||||||||||||
Sbjct: 80958 agacggggcagagggcagctt 80938



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>gb|AC159114.7| Mus musculus  BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 169393

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 270    gcagagggcagcttctttctacatt 294
              |||||||||||||| ||||||||||
Sbjct: 156745 gcagagggcagcttatttctacatt 156769



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>ref|XM_959899.1| Neurospora crassa OR74A hypothetical protein (NCU02589.1) partial
           mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 299 acaccacaaaagagaaccaaccac 322
           |||||||| |||||||||||||||
Sbjct: 587 acaccacacaagagaaccaaccac 610



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>ref|XM_331787.1| Neurospora crassa OR74A hypothetical protein (NCU02589.1) partial
           mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 299 acaccacaaaagagaaccaaccac 322
           |||||||| |||||||||||||||
Sbjct: 587 acaccacacaagagaaccaaccac 610



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>ref|XM_658145.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5633.2), mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  gttgcaacggatatagcaga 69
           ||||||||||||||||||||
Sbjct: 625 gttgcaacggatatagcaga 644



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>gb|AY071517.1| Drosophila melanogaster RE56935 full length cDNA
          Length = 3406

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  tttgtaccttctcgacgccc 258
            ||||||||||||||||||||
Sbjct: 2269 tttgtaccttctcgacgccc 2250



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>gb|AC153528.2| Mus musculus 10 BAC RP23-75N1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 159605

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     ttggttgtatgtcacatggc 37
              ||||||||||||||||||||
Sbjct: 100315 ttggttgtatgtcacatggc 100334



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>gb|AC012671.7| Homo sapiens BAC clone RP11-554H10 from 2, complete sequence
          Length = 198694

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   aagcttctccctactcgctg 238
             ||||||||||||||||||||
Sbjct: 83354 aagcttctccctactcgctg 83335



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>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE
          Length = 111922

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   atttccattagttacaataa 168
             ||||||||||||||||||||
Sbjct: 19958 atttccattagttacaataa 19977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,166,642
Number of Sequences: 3902068
Number of extensions: 3166642
Number of successful extensions: 54503
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54476
Number of HSP's gapped (non-prelim): 27
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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