Clone Name | rbastl06a06 |
---|---|
Clone Library Name | barley_pub |
>ATP8_HALGR (P38592) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)| (A6L) Length = 67 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 93 STWLFLVGFCVLSRDAYTYLKISVEYFPLN 4 STWL ++ +L+ +LK+S YFP N Sbjct: 7 STWLIMISSMILTLFITFHLKVSKHYFPTN 36
>TENR_MOUSE (Q8BYI9) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural| recognition molecule J1-160/180) Length = 1358 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +2 Query: 260 MNACFNRAYCISRLCVCEAG 319 +NAC R +C LC+CE G Sbjct: 298 LNACSGRGHCQEGLCICEEG 317
>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) Length = 2201 Score = 29.6 bits (65), Expect = 2.0 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +2 Query: 260 MNACFNRAYCISRLCVCEAG 319 +N C+NR C+ CVC+ G Sbjct: 285 LNNCYNRGRCVENECVCDEG 304 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 263 NACFNRAYCISRLCVCEAG 319 N CF+R CI+ C CE G Sbjct: 317 NDCFDRGRCINGTCYCEEG 335
>TENR_RAT (Q05546) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural| recognition molecule J1-160/180) Length = 1356 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +2 Query: 260 MNACFNRAYCISRLCVCEAG 319 +NAC R +C LC+CE G Sbjct: 298 LNACSGRGHCQEGLCICEEG 317
>TENR_HUMAN (Q92752) Tenascin-R precursor (TN-R) (Restrictin) (Janusin)| Length = 1358 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 260 MNACFNRAYCISRLCVCEAG 319 +NAC R C LCVCE G Sbjct: 298 LNACSGRGQCEEGLCVCEEG 317
>YCX6_ASTLO (P34780) Hypothetical 13.3 kDa protein in rpl23-rpl2 intergenic| region (ORF105) Length = 105 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 118 FRVLCNICFYMVIFSGFLRFISRCIYLSENIRR 20 + ++ I F+ VIF GFL FI YL + +R Sbjct: 6 YEIILYILFFCVIFYGFLSFIELFYYLRDPRKR 38
>YJ86_YEAST (P47153) Hypothetical 32.0 kDa protein in NNF1-STE24 intergenic| region Length = 279 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 165 WNITNGAILWT*EFVVFVCFATFVSTWLF 79 +N+ NG +L T FVV +C+ + S LF Sbjct: 198 FNVVNGLLLMTVFFVVRICWGSIASALLF 226
>TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) Length = 1808 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 263 NACFNRAYCISRLCVCEAG 319 N CF+R CI+ C CE G Sbjct: 318 NDCFDRGRCINGTCFCEEG 336 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 263 NACFNRAYCISRLCVCEAG 319 N C NR CI+ CVC+ G Sbjct: 411 NDCHNRGRCINGQCVCDEG 429 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +2 Query: 263 NACFNRAYCISRLCVCEAG 319 N C NR C+ CVC+ G Sbjct: 287 NNCHNRGRCVDNECVCDEG 305
>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)| Length = 1353 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +2 Query: 263 NACFNRAYCISRLCVCEAG 319 NAC R C LC+CE G Sbjct: 298 NACSGRGVCQDGLCICEDG 316
>LPAT5_ARATH (Q9LHN4) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5| (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 5) Length = 375 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 127 ICCFRVLCNICFYMVIFSGFLRFISRCIYLSENIRRIFSLEY 2 I C VL + F M+IF GF LS + R+FS+ Y Sbjct: 21 IICLMVLVSTAFMMLIFWGF---------LSAVVLRLFSIRY 53
>FOI_DROME (Q9VSL7) Zinc transporter foi precursor (Protein fear-of-intimacy)| (Protein kastchen) Length = 706 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +2 Query: 41 VYASRDKTQKPTKNNHVETNVAKHTKTTNSHVHR 142 VYA K ++N+HV + +H + + H HR Sbjct: 496 VYAVNKAKDKDSRNDHVTVILREHESSHHGHSHR 529
>RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose transporter 1)| Length = 567 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -2 Query: 313 LADTEP*NAVGPVEACIHCMIS*VTVGLFQGEFVNWLVASFSNSV 179 +++T P + G + +C MI T G+F G N+ ++SNSV Sbjct: 190 ISETAPKHLRGTLVSCYQLMI---TFGIFLGYCTNYGTKNYSNSV 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,780,234 Number of Sequences: 219361 Number of extensions: 894567 Number of successful extensions: 2136 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1993 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2133 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)