ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATP8_HALGR (P38592) ATP synthase protein 8 (EC 3.6.3.14) (ATPase... 30 2.0
2TENR_MOUSE (Q8BYI9) Tenascin-R precursor (TN-R) (Restrictin) (Ja... 30 2.0
3TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cyto... 30 2.0
4TENR_RAT (Q05546) Tenascin-R precursor (TN-R) (Restrictin) (Janu... 30 2.0
5TENR_HUMAN (Q92752) Tenascin-R precursor (TN-R) (Restrictin) (Ja... 29 3.3
6YCX6_ASTLO (P34780) Hypothetical 13.3 kDa protein in rpl23-rpl2 ... 28 4.4
7YJ86_YEAST (P47153) Hypothetical 32.0 kDa protein in NNF1-STE24 ... 28 5.7
8TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cyto... 28 5.7
9TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin) 27 9.7
10LPAT5_ARATH (Q9LHN4) Probable 1-acyl-sn-glycerol-3-phosphate acy... 27 9.7
11FOI_DROME (Q9VSL7) Zinc transporter foi precursor (Protein fear-... 27 9.7
12RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose tra... 27 9.7

>ATP8_HALGR (P38592) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
          (A6L)
          Length = 67

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 93 STWLFLVGFCVLSRDAYTYLKISVEYFPLN 4
          STWL ++   +L+     +LK+S  YFP N
Sbjct: 7  STWLIMISSMILTLFITFHLKVSKHYFPTN 36



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>TENR_MOUSE (Q8BYI9) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural|
           recognition molecule J1-160/180)
          Length = 1358

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 MNACFNRAYCISRLCVCEAG 319
           +NAC  R +C   LC+CE G
Sbjct: 298 LNACSGRGHCQEGLCICEEG 317



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>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C)
          Length = 2201

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 MNACFNRAYCISRLCVCEAG 319
           +N C+NR  C+   CVC+ G
Sbjct: 285 LNNCYNRGRCVENECVCDEG 304



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 NACFNRAYCISRLCVCEAG 319
           N CF+R  CI+  C CE G
Sbjct: 317 NDCFDRGRCINGTCYCEEG 335



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>TENR_RAT (Q05546) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural|
           recognition molecule J1-160/180)
          Length = 1356

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 MNACFNRAYCISRLCVCEAG 319
           +NAC  R +C   LC+CE G
Sbjct: 298 LNACSGRGHCQEGLCICEEG 317



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>TENR_HUMAN (Q92752) Tenascin-R precursor (TN-R) (Restrictin) (Janusin)|
          Length = 1358

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 MNACFNRAYCISRLCVCEAG 319
           +NAC  R  C   LCVCE G
Sbjct: 298 LNACSGRGQCEEGLCVCEEG 317



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>YCX6_ASTLO (P34780) Hypothetical 13.3 kDa protein in rpl23-rpl2 intergenic|
           region (ORF105)
          Length = 105

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 118 FRVLCNICFYMVIFSGFLRFISRCIYLSENIRR 20
           + ++  I F+ VIF GFL FI    YL +  +R
Sbjct: 6   YEIILYILFFCVIFYGFLSFIELFYYLRDPRKR 38



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>YJ86_YEAST (P47153) Hypothetical 32.0 kDa protein in NNF1-STE24 intergenic|
           region
          Length = 279

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 165 WNITNGAILWT*EFVVFVCFATFVSTWLF 79
           +N+ NG +L T  FVV +C+ +  S  LF
Sbjct: 198 FNVVNGLLLMTVFFVVRICWGSIASALLF 226



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>TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225)
          Length = 1808

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 NACFNRAYCISRLCVCEAG 319
           N CF+R  CI+  C CE G
Sbjct: 318 NDCFDRGRCINGTCFCEEG 336



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 NACFNRAYCISRLCVCEAG 319
           N C NR  CI+  CVC+ G
Sbjct: 411 NDCHNRGRCINGQCVCDEG 429



 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 263 NACFNRAYCISRLCVCEAG 319
           N C NR  C+   CVC+ G
Sbjct: 287 NNCHNRGRCVDNECVCDEG 305



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>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)|
          Length = 1353

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 263 NACFNRAYCISRLCVCEAG 319
           NAC  R  C   LC+CE G
Sbjct: 298 NACSGRGVCQDGLCICEDG 316



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>LPAT5_ARATH (Q9LHN4) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5|
           (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 5)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 127 ICCFRVLCNICFYMVIFSGFLRFISRCIYLSENIRRIFSLEY 2
           I C  VL +  F M+IF GF         LS  + R+FS+ Y
Sbjct: 21  IICLMVLVSTAFMMLIFWGF---------LSAVVLRLFSIRY 53



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>FOI_DROME (Q9VSL7) Zinc transporter foi precursor (Protein fear-of-intimacy)|
           (Protein kastchen)
          Length = 706

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 41  VYASRDKTQKPTKNNHVETNVAKHTKTTNSHVHR 142
           VYA      K ++N+HV   + +H  + + H HR
Sbjct: 496 VYAVNKAKDKDSRNDHVTVILREHESSHHGHSHR 529



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>RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose transporter 1)|
          Length = 567

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 313 LADTEP*NAVGPVEACIHCMIS*VTVGLFQGEFVNWLVASFSNSV 179
           +++T P +  G + +C   MI   T G+F G   N+   ++SNSV
Sbjct: 190 ISETAPKHLRGTLVSCYQLMI---TFGIFLGYCTNYGTKNYSNSV 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,780,234
Number of Sequences: 219361
Number of extensions: 894567
Number of successful extensions: 2136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2133
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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