>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 88     taatacaatgtgtagattatgt 109
              ||||||||||||||||||||||
Sbjct: 144108 taatacaatgtgtagattatgt 144129

>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 88     taatacaatgtgtagattatgt 109
              ||||||||||||||||||||||
Sbjct: 112873 taatacaatgtgtagattatgt 112894

>ref|XM_470513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3810

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 327  ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
            ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 2731 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 2683

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 327      ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
                ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 36050810 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 36050762

>gb|AF512737.1| Loxocemus bicolor 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence; mitochondrial genes for mitochondrial
            products
          Length = 1844

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 109  tactagaaatcaacagaccaaaaaa 133
            |||||| ||||||||||||||||||
Sbjct: 1193 tactagcaatcaacagaccaaaaaa 1217

>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                               
Query: 327    ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
              ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 112321 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 112273

>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence
          Length = 170245

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 333    cctttttcatctcagccaagg 353
              |||||||||||||||||||||
Sbjct: 137983 cctttttcatctcagccaagg 137963

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 327      ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
                ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 36140884 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 36140836

>dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115B06, full
            insert sequence
          Length = 4301

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 327  ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
            ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 2968 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 2920

>dbj|AK073260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I18, full
           insert sequence
          Length = 1483

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 327 ttttctcctttttcatctcagccaaggatgaggttgacttgctcactgc 375
           ||||||| || |||||| | ||||| ||||||||||| || ||||||||
Sbjct: 498 ttttctctttcttcatcgctgccaatgatgaggttgatttactcactgc 546

>gb|AC123597.9| Mus musculus chromosome 8, clone RP23-134A7, complete sequence
          Length = 172297

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    tctcctttttcatctcagcc 349
              ||||||||||||||||||||
Sbjct: 106031 tctcctttttcatctcagcc 106050

>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 18378 ccacttttctcctttttcat 18359

>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence
          Length = 188544

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     atgtgtagattgtaatacaa 49
              ||||||||||||||||||||
Sbjct: 106759 atgtgtagattgtaatacaa 106740

>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 18378 ccacttttctcctttttcat 18359

>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 18336 ccacttttctcctttttcat 18317

>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    aattgttggcctcatcaaca 171
              ||||||||||||||||||||
Sbjct: 114580 aattgttggcctcatcaaca 114561

>gb|BT011074.1| Drosophila melanogaster SD14261 full insert cDNA
          Length = 1487

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  gaaatcaacagaccaaaaaa 133
            ||||||||||||||||||||
Sbjct: 1455 gaaatcaacagaccaaaaaa 1474

>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 18375 ccacttttctcctttttcat 18356

>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
              complete sequence
          Length = 145980

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    ccacttttctcctttttcat 342
              ||||||||||||||||||||
Sbjct: 101749 ccacttttctcctttttcat 101730

>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
              complete sequence
          Length = 142814

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    ccacttttctcctttttcat 342
              ||||||||||||||||||||
Sbjct: 112337 ccacttttctcctttttcat 112356

>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   atcaacagaccaaaaaattt 136
             ||||||||||||||||||||
Sbjct: 34149 atcaacagaccaaaaaattt 34130

>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0075K12, complete sequence
          Length = 125936

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 16625 ccacttttctcctttttcat 16606

>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 91558 ccacttttctcctttttcat 91539

>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161735

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   tttctcctttttcatctcag 347
             ||||||||||||||||||||
Sbjct: 45571 tttctcctttttcatctcag 45552

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 11103682 ccacttttctcctttttcat 11103701



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     ccacttttctcctttttcat 342
               ||||||||||||||||||||
Sbjct: 9247628 ccacttttctcctttttcat 9247609



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     ccacttttctcctttttcat 342
               ||||||||||||||||||||
Sbjct: 9143723 ccacttttctcctttttcat 9143704

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      atcaacagaccaaaaaattt 136
                ||||||||||||||||||||
Sbjct: 17338130 atcaacagaccaaaaaattt 17338149



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 15768168 ccacttttctcctttttcat 15768149



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 10310233 ccacttttctcctttttcat 10310214

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 14377966 ccacttttctcctttttcat 14377985

>gb|AC073393.2|AC073393 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0076M18,
             complete sequence
          Length = 132647

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 63128 ccacttttctcctttttcat 63109

>dbj|AB207348.1| Hordeum vulgare DNA, trnC-rpoB intergenic region, strain:-
          Length = 1147

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 323 ccacttttctcctttttcatctca 346
           |||||||||| |||||||||||||
Sbjct: 246 ccacttttcttctttttcatctca 223

>gb|AC011242.8| Homo sapiens BAC clone RP11-489K22 from 2, complete sequence
          Length = 186091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 324   cacttttctcctttttcatctcag 347
             ||||||||||||||| ||||||||
Sbjct: 41765 cacttttctccttttccatctcag 41788

>ref|XM_578775.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916
           (LOC503244), mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 323 ccacttttctcctttttcatctcagcca 350
           ||||||||||||| |||||||| |||||
Sbjct: 822 ccacttttctcctgtttcatctgagcca 849

>ref|XM_236967.3| PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916
           (LOC301278), mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 323 ccacttttctcctttttcatctcagcca 350
           ||||||||||||| |||||||| |||||
Sbjct: 540 ccacttttctcctgtttcatctgagcca 567

>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0022A24
          Length = 148347

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 99888 ccacttttctcctttttcat 99907

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      atcaacagaccaaaaaattt 136
                ||||||||||||||||||||
Sbjct: 17347170 atcaacagaccaaaaaattt 17347189



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 15776409 ccacttttctcctttttcat 15776390



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 323      ccacttttctcctttttcat 342
                ||||||||||||||||||||
Sbjct: 10316272 ccacttttctcctttttcat 10316253

>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ccacttttctcctttttcat 342
             ||||||||||||||||||||
Sbjct: 18310 ccacttttctcctttttcat 18291


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,947,465
Number of Sequences: 3902068
Number of extensions: 3947465
Number of successful extensions: 81065
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80852
Number of HSP's gapped (non-prelim): 213
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)