ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4,... 125 1e-25
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA... 125 1e-25
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
8dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
9dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA... 101 2e-18
10emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, ex... 74 3e-10
11emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein 74 3e-10
12emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) 58 2e-05
13gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 48 0.020
14gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) ... 48 0.020
15gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete se... 44 0.31
16gb|AY971521.1| Chloromyxum cf. cristatum SH-2005 small subunit r... 42 1.2
17gb|AY604198.1| Chloromyxum cyprini small subunit ribosomal RNA g... 42 1.2
18emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) 42 1.2
19emb|AJ582006.2|APA582006 Aurantiactinomyxon pavinsis partial 18S... 42 1.2
20emb|AJ581916.2|CTR581916 Chloromyxum truttae partial 18S rRNA gene 42 1.2
21gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 42 1.2
22dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
24dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
26gb|AY110994.1| Zea mays CL1209_1 mRNA sequence 42 1.2
27ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); ... 40 4.9
28gb|AC109291.12| Mus musculus chromosome 18, clone RP24-231C23, c... 40 4.9
29ref|XM_676050.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 4.9
30gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 4.9
31gb|AF363172.1| Eukaryote marine clone ANT12-3 18S ribosomal RNA ... 40 4.9
32gb|AF034638.1| Kudoa amamiensis small subunit ribosomal RNA gene... 40 4.9
33gb|AC166995.2| Mus musculus BAC clone RP23-255N15 from chromosom... 40 4.9
34emb|AJ780930.1| Bos taurus gart gene, son gene, donson gene and ... 40 4.9
35gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complet... 40 4.9
36gb|AY152748.1| Kudoa amamiensis 18S ribosomal RNA gene, partial ... 40 4.9
37emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 4.9
38gb|AF483598.1| Aurantiactinomyxon sp. CN-2002 18S ribosomal RNA ... 40 4.9
39gb|AF519241.1| Siphonosoma cumanense isolate DNA100235 18S ribos... 40 4.9
40emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 4.9
41gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map ... 40 4.9
42gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequ... 40 4.9
43gb|AC036102.8| Homo sapiens chromosome 15 clone CTD-2297L20 map ... 40 4.9
44gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, com... 40 4.9
45emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Co... 40 4.9
46gb|AF051329.1|AF051329 Macrostomum hystricinum 18S ribosomal RNA... 40 4.9
47gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 4.9
48gb|AY884159.1| Ceratonereis erythraeenis 18S ribosomal RNA gene,... 40 4.9
49gb|AY326291.1| Siphonosoma cumanense MCZ DNA100622 18S ribosomal... 40 4.9
50gb|AC148020.3| Mus musculus BAC clone RP23-6A22 from 18, complet... 40 4.9
51gb|U70080.1|MTU70080 Macrostomum tuba 18S ribosomal RNA gene, co... 40 4.9
52gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AH... 40 4.9
53gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox p... 40 4.9
54emb|AJ270161.1|PNO270161 Polystyliphora novaehollandiae 18S rRNA... 40 4.9
55dbj|D85091.1| Macrostomum tuba DNA for 18S ribosomal RNA 40 4.9 
>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06,
             complete sequence
          Length = 125196

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                         
Query: 252   gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
             |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 65127 gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgccccgtccggtcctt 65186

                            
Query: 312   accacctagcaaagg 326
              ||||||||||||||
Sbjct: 65187 gccacctagcaaagg 65201
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                            
Query: 252      gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
                |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 28574337 gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgccccgtccggtcctt 28574396

                               
Query: 312      accacctagcaaagg 326
                 ||||||||||||||
Sbjct: 28574397 gccacctagcaaagg 28574411
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>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full
            insert sequence
          Length = 3089

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
            |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2718 gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgccccgtccggtcctt 2659

                           
Query: 312  accacctagcaaagg 326
             ||||||||||||||
Sbjct: 2658 gccacctagcaaagg 2644
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>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full
            insert sequence
          Length = 3052

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
            |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2700 gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgccccgtccggtcctt 2641

                           
Query: 312  accacctagcaaagg 326
             ||||||||||||||
Sbjct: 2640 gccacctagcaaagg 2626
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>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 2957

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
            |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2602 gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgccccgtccggtcctt 2543

                           
Query: 312  accacctagcaaagg 326
             ||||||||||||||
Sbjct: 2542 gccacctagcaaagg 2528
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                            
Query: 252      gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
                ||||||||||||||||||||||||||||||||||||||||||| ||| |||  | |||||
Sbjct: 27506761 gagtcaatacccgaaccaccaccattgctctgtgctaaggaccggccaagcaagatcctt 27506820

                               
Query: 312      accacctagcaaagg 326
                | |||||||||||||
Sbjct: 27506821 atcacctagcaaagg 27506835
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                         
Query: 252   gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
             ||||||||||||||||||||||||||||||||||||||||||| ||| |||  | |||||
Sbjct: 98483 gagtcaatacccgaaccaccaccattgctctgtgctaaggaccggccaagcaagatcctt 98542

                            
Query: 312   accacctagcaaagg 326
             | |||||||||||||
Sbjct: 98543 atcacctagcaaagg 98557
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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
            insert sequence
          Length = 3437

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                        
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
            ||||||||||||||||||||||||||||||||||||||||||| ||| |||  | |||||
Sbjct: 3035 gagtcaatacccgaaccaccaccattgctctgtgctaaggaccggccaagcaagatcctt 2976

                           
Query: 312  accacctagcaaagg 326
            | |||||||||||||
Sbjct: 2975 atcacctagcaaagg 2961
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>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3114

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                        
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgcccagcccggtcctt 311
            ||||||||||||||||||||||||||||||||||||||||||| ||| |||  | |||||
Sbjct: 2715 gagtcaatacccgaaccaccaccattgctctgtgctaaggaccggccaagcaagatcctt 2656

                           
Query: 312  accacctagcaaagg 326
            | |||||||||||||
Sbjct: 2655 atcacctagcaaagg 2641
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>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9
          Length = 9947

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                        
Query: 251  cgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg-cccagcccggtcc 309
            ||||||||||||||||||||||||||||||| ||||||| |||| | || |||  | |||
Sbjct: 9000 cgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagctggatcc 8941

                             
Query: 310  ttaccacctagcaaagg 326
            ||| |||||||||||||
Sbjct: 8940 ttatcacctagcaaagg 8924
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>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                        
Query: 251  cgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg-cccagcccggtcc 309
            ||||||||||||||||||||||||||||||| ||||||| |||| | || |||  | |||
Sbjct: 2778 cgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagctggatcc 2719

                             
Query: 310  ttaccacctagcaaagg 326
            ||| |||||||||||||
Sbjct: 2718 ttatcacctagcaaagg 2702
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>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene)
          Length = 2660

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 252  gagtcaatacccgaaccaccaccattgctctgtgcta 288
            |||||||||||||||||||| |||||||| |||||||
Sbjct: 2340 gagtcaatacccgaaccaccgccattgctgtgtgcta 2304
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>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 251   cgagtcaatacccgaaccaccacc 274
             ||||||||||||||||||||||||
Sbjct: 25597 cgagtcaatacccgaaccaccacc 25620
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>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds
          Length = 2423

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 251  cgagtcaatacccgaaccaccaccattgctctgtgctaag 290
            |||||||||||||||||||||| | ||||  |||||||||
Sbjct: 2276 cgagtcaatacccgaaccaccagccttgcattgtgctaag 2237
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>gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete sequence
          Length = 95710

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 333   tcctattttcgcggttcgttctcgactcga 362
             |||| ||||||||||||||||| |||||||
Sbjct: 87627 tccttttttcgcggttcgttcttgactcga 87598
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>gb|AY971521.1| Chloromyxum cf. cristatum SH-2005 small subunit ribosomal RNA gene,
            partial sequence
          Length = 2076

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   cccccggaacctaaagacttg 56
            |||||||||||||||||||||
Sbjct: 1223 cccccggaacctaaagacttg 1203
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>gb|AY604198.1| Chloromyxum cyprini small subunit ribosomal RNA gene, complete
            sequence
          Length = 2126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   cccccggaacctaaagacttg 56
            |||||||||||||||||||||
Sbjct: 1258 cccccggaacctaaagacttg 1238
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>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene)
          Length = 3580

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  agtcaatacccgaaccaccac 273
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>emb|AJ582006.2|APA582006 Aurantiactinomyxon pavinsis partial 18S rRNA gene
          Length = 1567

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   cccccggaacctaaagacttg 56
            |||||||||||||||||||||
Sbjct: 1087 cccccggaacctaaagacttg 1067
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>emb|AJ581916.2|CTR581916 Chloromyxum truttae partial 18S rRNA gene
          Length = 1572

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   cccccggaacctaaagacttg 56
            |||||||||||||||||||||
Sbjct: 1087 cccccggaacctaaagacttg 1067
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>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 265   aaccaccaccattgctctgtgctaa 289
             |||||||||||||||| ||||||||
Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 253      agtcaatacccgaaccaccac 273
                |||||||||||||||||||||
Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 253   agtcaatacccgaaccaccac 273
             |||||||||||||||||||||
Sbjct: 45974 agtcaatacccgaaccaccac 45994
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 253    agtcaatacccgaaccaccac 273
              |||||||||||||||||||||
Sbjct: 160347 agtcaatacccgaaccaccac 160367
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>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full
            insert sequence
          Length = 2218

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  agtcaatacccgaaccaccac 273
            |||||||||||||||||||||
Sbjct: 2007 agtcaatacccgaaccaccac 1987
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>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence
          Length = 3550

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  agtcaatacccgaaccaccac 273
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor
            AT4G00730 (ANL2) mRNA, complete cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  agtcaatacccgaaccacca 272
            ||||||||||||||||||||
Sbjct: 3018 agtcaatacccgaaccacca 2999
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>gb|AC109291.12| Mus musculus chromosome 18, clone RP24-231C23, complete sequence
          Length = 191711

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 221   ccaaaatgcgaatgtcatgggaga 244
             ||||||||| ||||||||||||||
Sbjct: 33514 ccaaaatgccaatgtcatgggaga 33491
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>ref|XM_676050.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7873.2), mRNA
          Length = 6336

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  ttctgagcgagttcctgcag 120
            ||||||||||||||||||||
Sbjct: 3047 ttctgagcgagttcctgcag 3066
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    acccgaaccaccaccattgc 279
              ||||||||||||||||||||
Sbjct: 490925 acccgaaccaccaccattgc 490906
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>gb|AF363172.1| Eukaryote marine clone ANT12-3 18S ribosomal RNA gene, partial
           sequence
          Length = 699

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cccccggaacctaaagactt 55
           ||||||||||||||||||||
Sbjct: 648 cccccggaacctaaagactt 629
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>gb|AF034638.1| Kudoa amamiensis small subunit ribosomal RNA gene, partial sequence
          Length = 1602

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   ccccggaacctaaagacttg 56
            ||||||||||||||||||||
Sbjct: 1093 ccccggaacctaaagacttg 1074
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>gb|AC166995.2| Mus musculus BAC clone RP23-255N15 from chromosome 16, complete
             sequence
          Length = 170106

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   tgagcgagttcctgcagaaagcat 127
             ||||| ||||||||||||||||||
Sbjct: 55569 tgagctagttcctgcagaaagcat 55592
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>emb|AJ780930.1| Bos taurus gart gene, son gene, donson gene and cryzl1 gene
          Length = 121958

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ggttaagctcttactgtctg 219
             ||||||||||||||||||||
Sbjct: 26138 ggttaagctcttactgtctg 26157
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>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 252  gagtcaatacccgaaccaccaccattgc 279
            ||||||||||||||||||| ||| ||||
Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
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>gb|AY152748.1| Kudoa amamiensis 18S ribosomal RNA gene, partial sequence
          Length = 1739

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   ccccggaacctaaagacttg 56
            ||||||||||||||||||||
Sbjct: 1113 ccccggaacctaaagacttg 1094
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>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    agtcaatacccgaaccacca 272
              ||||||||||||||||||||
Sbjct: 106202 agtcaatacccgaaccacca 106221
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>gb|AF483598.1| Aurantiactinomyxon sp. CN-2002 18S ribosomal RNA gene, complete
            sequence
          Length = 1946

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1306 cccccggaacctaaagactt 1287
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>gb|AF519241.1| Siphonosoma cumanense isolate DNA100235 18S ribosomal RNA gene,
            partial sequence
          Length = 1771

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1103 cccccggaacctaaagactt 1084
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   gaaccaccaccattgctctg 283
             ||||||||||||||||||||
Sbjct: 63006 gaaccaccaccattgctctg 63025
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>gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map 15q21.1, complete
           sequence
          Length = 176827

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 atcacatcttgccatcccca 145
           ||||||||||||||||||||
Sbjct: 776 atcacatcttgccatcccca 757
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>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence
          Length = 2075

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  agtcaatacccgaaccacca 272
            ||||||||||||||||||||
Sbjct: 1938 agtcaatacccgaaccacca 1919
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>gb|AC036102.8| Homo sapiens chromosome 15 clone CTD-2297L20 map 15q21.1, complete
              sequence
          Length = 127603

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    atcacatcttgccatcccca 145
              ||||||||||||||||||||
Sbjct: 118995 atcacatcttgccatcccca 118976
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>gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, complete sequence
          Length = 239105

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    ttactgtctgtccaaaatgc 229
              ||||||||||||||||||||
Sbjct: 149930 ttactgtctgtccaaaatgc 149911
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>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3144

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  agtcaatacccgaaccacca 272
            ||||||||||||||||||||
Sbjct: 2957 agtcaatacccgaaccacca 2938
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>gb|AF051329.1|AF051329 Macrostomum hystricinum 18S ribosomal RNA gene, complete sequence
          Length = 1759

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1076 cccccggaacctaaagactt 1057
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>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   agtcaatacccgaaccacca 272
             ||||||||||||||||||||
Sbjct: 87328 agtcaatacccgaaccacca 87347
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>gb|AY884159.1| Ceratonereis erythraeenis 18S ribosomal RNA gene, partial sequence
          Length = 1665

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1139 cccccggaacctaaagactt 1120
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>gb|AY326291.1| Siphonosoma cumanense MCZ DNA100622 18S ribosomal RNA gene, partial
            sequence
          Length = 1698

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1030 cccccggaacctaaagactt 1011
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>gb|AC148020.3| Mus musculus BAC clone RP23-6A22 from 18, complete sequence
          Length = 238892

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   ccaaaatgcgaatgtcatgggaga 244
             ||||||||| ||||||||||||||
Sbjct: 90353 ccaaaatgccaatgtcatgggaga 90376
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>gb|U70080.1|MTU70080 Macrostomum tuba 18S ribosomal RNA gene, complete sequence
          Length = 1783

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1122 cccccggaacctaaagactt 1103
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>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds
          Length = 2953

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  agtcaatacccgaaccacca 272
            ||||||||||||||||||||
Sbjct: 2838 agtcaatacccgaaccacca 2819
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>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 252  gagtcaatacccgaaccaccaccattgc 279
            |||||||||||||||||| |||| ||||
Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771
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>emb|AJ270161.1|PNO270161 Polystyliphora novaehollandiae 18S rRNA gene
          Length = 1760

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1102 cccccggaacctaaagactt 1083
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>dbj|D85091.1| Macrostomum tuba DNA for 18S ribosomal RNA
          Length = 1652

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cccccggaacctaaagactt 55
            ||||||||||||||||||||
Sbjct: 1062 cccccggaacctaaagactt 1043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,337,139
Number of Sequences: 3902068
Number of extensions: 2337139
Number of successful extensions: 54440
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54324
Number of HSP's gapped (non-prelim): 114
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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