ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06a02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds Length = 3338 Score = 706 bits (356), Expect = 0.0 Identities = 375/380 (98%), Gaps = 1/380 (0%) Strand = Plus / Minus Query: 1 aaacgtaaaactggtattgttttctcctcctgctgtttcatcttatcagcctatatgtac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3168 aaacgtaaaactggtattgttttctcctcctgctgtttcatcttatcagcctatatgtac 3109 Query: 61 tgtacatacccgcagcaaagcttttgcttgcaacagcggggtgaatgctatctagactgg 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3108 tgtacatacccgcagcagagcttttgcttgcaacagcggggtgaatgctatctagactgg 3049 Query: 121 gacccagatatggggacaaaatcataattactccttattcacacttgggggatgacaacc 180 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3048 gacccagatatggtgacaaaatcataattactccttattcacacttggtggatgacaacc 2989 Query: 181 ccggggtaaagatgtgagatgtgcggttcaccgatataaagatatttcatagggtacatg 240 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2988 ccggggtagagatgtgagatgtgcggttcaccgatataaagatatttcatagggtacatg 2929 Query: 241 attgctcgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2928 attgctcgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagct 2869 Query: 301 agttaattggatgaaagaagggcgcaagtttggatccttctgcc-acaatcacgtataat 359 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2868 agttaattggatgaaagaagggcgcaagtttggatccttctgccaacaatcacgtataat 2809 Query: 360 tgatgcaactataggatcaa 379 |||||||||||||||||||| Sbjct: 2808 tgatgcaactataggatcaa 2789
>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively spliced Length = 3050 Score = 369 bits (186), Expect = 4e-99 Identities = 230/244 (94%), Gaps = 8/244 (3%) Strand = Plus / Minus Query: 135 gacaaaatcataattactccttattcacacttgggggatgacaaccccggggtaaagatg 194 |||||||||||||||||| ||||||||||||||| || |||||||||||||||| Sbjct: 3016 gacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggta------ 2963 Query: 195 tgagatgtgcggttcaccgatataaagatatttcatagggtacatgattgctcgctgtct 254 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2962 -gagatgtgcggttcaccgatataaagatatttcatagggtacatggttgctcgctgtct 2904 Query: 255 cctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaattggatga 314 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2903 cctgatgtgaagggattacaagcctttgcaatgtcttcaggtagctagttaattggatga 2844 Query: 315 aagaagggcgcaagtttggatccttctgcca-caatcacgtataattgatgcaactatag 373 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2843 aagaaggacgcaagtttggatccttctgccagcaatcacgtataattgatgcaactatag 2784 Query: 374 gatc 377 |||| Sbjct: 2783 gatc 2780
>ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative enhanced disease resistance protein (OSJNBa0073D04.42), mRNA Length = 516 Score = 147 bits (74), Expect = 3e-32 Identities = 120/134 (89%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 477 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagttag 418 Query: 307 ttggatgaaagaagggcgcaagtttggatccttctgcca-caatcacgtataattgatgc 365 ||| | |||||||||||||||||||||||||||||||| || || ||||||| ||||| Sbjct: 417 ctggctaaaagaagggcgcaagtttggatccttctgccagcagtcctgtataatagatgc 358 Query: 366 aactataggatcaa 379 ||||| |||||||| Sbjct: 357 aactagaggatcaa 344
>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full insert sequence Length = 3394 Score = 139 bits (70), Expect = 7e-30 Identities = 119/134 (88%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||| Sbjct: 2976 cgctgtctcctgatgacaagggattacttgcctttgcaatgtattcagatagctagttag 2917 Query: 307 ttggatgaaagaagggcgcaagtttggatccttctgcca-caatcacgtataattgatgc 365 ||| | |||||||||||||||||||||||||||||||| || || ||||||| ||||| Sbjct: 2916 ctggctaaaagaagggcgcaagtttggatccttctgccagcagtcctgtataatagatgc 2857 Query: 366 aactataggatcaa 379 ||||| |||||||| Sbjct: 2856 aactagaggatcaa 2843
>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04, complete sequence Length = 155372 Score = 117 bits (59), Expect = 3e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 153285 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagttag 153344 Query: 307 ttggatgaaagaagggcgcaagtttggatcc 337 ||| | |||||||||||||||||||||||| Sbjct: 153345 ctggctaaaagaagggcgcaagtttggatcc 153375
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 117 bits (59), Expect = 3e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 7914 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagttag 7973 Query: 307 ttggatgaaagaagggcgcaagtttggatcc 337 ||| | |||||||||||||||||||||||| Sbjct: 7974 ctggctaaaagaagggcgcaagtttggatcc 8004
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 117 bits (59), Expect = 3e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14828136 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagttag 14828195 Query: 307 ttggatgaaagaagggcgcaagtttggatcc 337 ||| | |||||||||||||||||||||||| Sbjct: 14828196 ctggctaaaagaagggcgcaagtttggatcc 14828226
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 117 bits (59), Expect = 3e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 247 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaa 306 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14836377 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagttag 14836436 Query: 307 ttggatgaaagaagggcgcaagtttggatcc 337 ||| | |||||||||||||||||||||||| Sbjct: 14836437 ctggctaaaagaagggcgcaagtttggatcc 14836467
>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two novel genes and three CpG islands, complete sequence Length = 158779 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 atatggggacaaaatcataatt 149 |||||||||||||||||||||| Sbjct: 142850 atatggggacaaaatcataatt 142829
>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1038 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ctatatgtactgtacataccc 71 ||||||||||||||||||||| Sbjct: 992 ctatatgtactgtacataccc 1012
>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence Length = 210968 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 acaaaatcataattactcct 155 |||||||||||||||||||| Sbjct: 94714 acaaaatcataattactcct 94733
>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence Length = 148114 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 aaactggtattgttttctcctcct 31 |||||||||||||||||| ||||| Sbjct: 147762 aaactggtattgttttcttctcct 147739
>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence Length = 205725 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aaactggtattgttttctcctcct 31 |||||||||||||||||| ||||| Sbjct: 187413 aaactggtattgttttcttctcct 187436
>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence Length = 232275 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tataaagatatttcataggg 234 |||||||||||||||||||| Sbjct: 228202 tataaagatatttcataggg 228183
>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1 Length = 218160 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tttgcaatgtcttcaggtag 298 |||||||||||||||||||| Sbjct: 29101 tttgcaatgtcttcaggtag 29082
>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence Length = 180461 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tttgcaatgtcttcaggtag 298 |||||||||||||||||||| Sbjct: 54604 tttgcaatgtcttcaggtag 54623
>emb|X68824.1|ECPREP E.coli plasmid (IncHI1 group) rep gene for replication protein Length = 2390 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tttgcaatgtcttcaggtag 298 |||||||||||||||||||| Sbjct: 1722 tttgcaatgtcttcaggtag 1703
>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence Length = 233984 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ctggtattgttttctcctcc 30 |||||||||||||||||||| Sbjct: 132846 ctggtattgttttctcctcc 132827
>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence Length = 190003 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tataaagatatttcataggg 234 |||||||||||||||||||| Sbjct: 87088 tataaagatatttcataggg 87107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,235,732 Number of Sequences: 3902068 Number of extensions: 3235732 Number of successful extensions: 69995 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69920 Number of HSP's gapped (non-prelim): 73 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
