>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 167 NSHIQFILLKDSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSK--TMPCSSPSGLPQ 340
           N+H Q +LL++    N++ P  +     PP+T++   LK+ +   K   M CS+   L  
Sbjct: 639 NTHAQVVLLQNLKKANYNIPISVTDSGKPPLTNN-TELKLQVCSCKKSRMDCSASDALHI 697

Query: 341 SL 346
           S+
Sbjct: 698 SM 699

>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 200 SCLRNFHCPACIFSVASPPITSSMRSL-KMDLSMSKTMPCSSP 325
           S L+NF  P+C F+   P   S ++ L K+DLS +  + CS P
Sbjct: 210 SLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYN-PLKCSIP 251

>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163|
          Length = 1693

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 124  LHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSLHLLCSLATYNLVNEVPENGPLNV 300
            L  L+A +  G D Q+  +  T   Q P+  P  SLH +  LA  N  N     GP+ V
Sbjct: 959  LEALLAAVKTGQDLQKLVTPETPLVQYPSLAPWLSLHSI--LARINECNRCHHEGPVTV 1015

>RRMJ3_RAT (Q5RJT2) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 829

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 402 SEEDEDENIPLSEDALYEMRDWGSPEGELQGMVLDIERSIFRDLIDEVIGGEA--TEKMQ 229
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID      A   E+ +
Sbjct: 627 ADEDGFEVVPIEDPVKYRILD---PEGLALGAVIASSKKAKRDLIDNSFNRYAFNEEEEE 683

Query: 228 AGQWKLRRQ 202
             +W ++ +
Sbjct: 684 LPEWFVQEE 692

>RRMJ3_MOUSE (Q9DBE9) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 838

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 402 SEEDEDENIPLSEDALYEMRDWGSPEGELQGMVLDIERSIFRDLID 265
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID
Sbjct: 635 ADEDGFEVVPIQDPVKYRILD---PEGLALGAVIASSKKAKRDLID 677

>RRMJ3_PONPY (Q5RAS1) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 841

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 402 SEEDEDENIPLSEDALYEMRDWGSPEGELQGMVLDIERSIFRDLID 265
           S++D  E +P+ + A + + D   PEG   G V+   +   RDLID
Sbjct: 638 SDDDGFEIVPIEDPAKHRILD---PEGLALGAVIASSKKAKRDLID 680

>NTR2_MOUSE (P70310) Neurotensin receptor type 2 (NT-R-2) (Low-affinity|
           levocabastine-sensitive neurotensin receptor) (NTRL)
          Length = 417

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -2

Query: 435 RLLSESLAAKCSEEDE----DENIPLSEDALYEMRDWGSPE----GELQ 313
           +L  ESL++ C E+       +  P S  + Y  R WGSP     GE+Q
Sbjct: 368 KLFLESLSSLCGEQRSVVPLPQEAPESTTSTYSFRLWGSPRNPSLGEIQ 416

>RRMJ3_HUMAN (Q8IY81) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 847

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 402 SEEDEDENIPLSEDALYEMRDWGSPEGELQGMVLDIERSIFRDLID 265
           S++D  E +P+ + A + + D   PEG   G V+   +   RDLID
Sbjct: 644 SDDDGFEIVPIEDPAKHRILD---PEGLALGAVIASSKKAKRDLID 686

>NTR2_RAT (Q63384) Neurotensin receptor type 2 (NT-R-2) (High-affinity|
           levocabastine-sensitive neurotensin receptor)
          Length = 416

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -2

Query: 435 RLLSESLAAKCSEEDE----DENIPLSEDALYEMRDWGSPE----GELQ 313
           +L  ESL + C E+       +  P S  + Y  R WGSP     GE+Q
Sbjct: 367 KLFLESLGSLCGEQHSLVPLPQEAPESTTSTYSFRLWGSPRNPSLGEIQ 415

>LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphate 3)
          Length = 2200

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 245 ASPPITSSMRSLKMDLSMSKTMPCSSPSGL 334
           A+ P++   RSL  D  + K  PC  P+GL
Sbjct: 437 ATAPVSPQARSLNRDSILVKWGPCEQPNGL 466

>GLB_NASMU (P31331) Globin (Myoglobin)|
          Length = 147

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 291 RSIFRDLIDEVIGGEATEKMQA 226
           RSIF + +D+  GG+ATE M++
Sbjct: 112 RSIFGEFLDKATGGKATESMKS 133

>CAD13_HUMAN (P55290) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad) (Heart-cadherin) (H-cadherin) (P105)
          Length = 713

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = +2

Query: 167 NSHIQFILLKDSCLRNFHCPACIFSVASPPITS---------SMRSLKMDLSMSKTMPCS 319
           N+H    LL++    N++ P  +     PP+T+         S R+ K+D + +  +  S
Sbjct: 639 NTHALVSLLQNLNKANYNLPIMVTDSGKPPMTNITDLRVQVCSCRNSKVDCNAAGALRFS 698

Query: 320 SPSGLPQSLIS 352
            PS L  SL S
Sbjct: 699 LPSVLLLSLFS 709

>PCDBF_HUMAN (Q9Y5E8) Protocadherin beta 15 precursor (PCDH-beta15)|
          Length = 787

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 58  PEFQE*LYFFYIIQSSEKKYKGLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSL 231
           PEF + LY   + ++S      + +    +  G + + SYS+Y + +++   F LSSL
Sbjct: 240 PEFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSL 297

>Y676_MYCPN (P75116) Hypothetical protein MPN676 (K05_orf106)|
          Length = 106

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 85  FYIIQSSEKKYKGLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSLHLLCSLAT 255
           +Y+      +++   ++ +K+P+GN  Q  ++  T+   L   + LS  HLL  + T
Sbjct: 46  YYVFGFFTFRWQRSLIITSKVPSGNGIQFDFNSRTSHWLLNFLYSLSEYHLLFKVKT 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,047,044
Number of Sequences: 219361
Number of extensions: 1221720
Number of successful extensions: 3634
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3633
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)