ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GERXB_BACAN (Q9ZFB5) Spore germination protein XB 28 7.7

>GERXB_BACAN (Q9ZFB5) Spore germination protein XB|
          Length = 355

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 156 GKNSIQHITGIVLP-----SLFCQLKD*SQRERSLLKPLAEH 266
           G  SI   TGI+LP       F  + +   ++ SLLKP+ EH
Sbjct: 131 GVQSIALTTGILLPVVFLLGFFVMIANFPHKDYSLLKPIMEH 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,562,822
Number of Sequences: 219361
Number of extensions: 615589
Number of successful extensions: 1403
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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