>emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86L3, complete sequence
          Length = 154099

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 86     catgctacaacaacaagttaga 107
              ||||||||||||||||||||||
Sbjct: 128788 catgctacaacaacaagttaga 128809

>gb|AF134591.2|AF134591 Cryptosporidium parvum P-type ATPase 2 (ATPase2) gene, complete cds
          Length = 3863

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 57  acttgatgaaagaaaaaagatt 78
           ||||||||||||||||||||||
Sbjct: 201 acttgatgaaagaaaaaagatt 222

>gb|AC169702.1| Rhesus Macaque  BAC CH250-107F18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 157010

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   attcaacatattaccggtatc 188
             |||||||||||||||||||||
Sbjct: 31149 attcaacatattaccggtatc 31169

>emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on chromosome 13 Contains the
             gene for the ortholog of rat and human
             ubiquinol-cytochrome c reductase, Rieske iron-sulfur
             polypeptide 1 UQCRFS1, a novel gene and a CpG island,
             complete sequence
          Length = 194065

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   ctgaaggactgaagtcagaga 233
             |||||||||||||||||||||
Sbjct: 54116 ctgaaggactgaagtcagaga 54136

>gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, complete sequence
          Length = 200292

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    ccttcaaagcctttagcaagt 131
              |||||||||||||||||||||
Sbjct: 171589 ccttcaaagcctttagcaagt 171609

>dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB229B8, complete
             sequence
          Length = 95577

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   ccttcaaagcctttagcaagt 131
             |||||||||||||||||||||
Sbjct: 82211 ccttcaaagcctttagcaagt 82191

>dbj|AP004581.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1501B2, complete
            sequence
          Length = 141400

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  ccttcaaagcctttagcaagt 131
            |||||||||||||||||||||
Sbjct: 4112 ccttcaaagcctttagcaagt 4092

>gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete sequence
          Length = 111942

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatgacttgatgaaagaaaa 72
             ||||||||||||||||||||
Sbjct: 12625 aatgacttgatgaaagaaaa 12606

>gb|AY458633.1| Uncultured bacterium 313 clone EBAC750-11E01 genomic sequence
          Length = 27088

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tacaacaacaagttagatca 110
             ||||||||||||||||||||
Sbjct: 23256 tacaacaacaagttagatca 23237

>gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, complete sequence
          Length = 169511

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aatgacttgatgaaagaaaa 72
             ||||||||||||||||||||
Sbjct: 33255 aatgacttgatgaaagaaaa 33274

>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 293757

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gactgaagtcagagagaacg 238
             ||||||||||||||||||||
Sbjct: 79551 gactgaagtcagagagaacg 79532

>gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   gaaggactgaagtcagagag 234
             ||||||||||||||||||||
Sbjct: 12785 gaaggactgaagtcagagag 12804

>emb|CR861258.1| Pongo pygmaeus mRNA; cDNA DKFZp459H223 (from clone DKFZp459H223)
          Length = 3619

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  gaaggactgaagtcagagag 234
            ||||||||||||||||||||
Sbjct: 2049 gaaggactgaagtcagagag 2068

>emb|CR860338.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1245 (from clone DKFZp459K1245)
          Length = 2025

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 gaaggactgaagtcagagag 234
           ||||||||||||||||||||
Sbjct: 454 gaaggactgaagtcagagag 473

>emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 in linkage group 5,
             complete sequence
          Length = 160405

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ctgaaggactgaagtcagag 232
             ||||||||||||||||||||
Sbjct: 72643 ctgaaggactgaagtcagag 72624

>gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    gaaggactgaagtcagagag 234
              ||||||||||||||||||||
Sbjct: 171010 gaaggactgaagtcagagag 171029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,426,724
Number of Sequences: 3902068
Number of extensions: 3426724
Number of successful extensions: 64044
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64021
Number of HSP's gapped (non-prelim): 23
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)